Pairwise Alignments

Query, 230 a.a., ribosomal small subunit pseudouridine synthase A from Pseudomonas putida KT2440

Subject, 241 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella sp. ANA-3

 Score =  233 bits (594), Expect = 2e-66
 Identities = 122/229 (53%), Positives = 153/229 (66%), Gaps = 1/229 (0%)

Query: 2   RLDRFLANLPSYNRQNVRLMLAQRRVRVDGQVVSDPLTDVREFSRVELDEQLLQAGRPAR 61
           RLDR+LA     +R+ VR +L   RV VDG         V EFS +  D Q+LQA +P  
Sbjct: 7   RLDRYLAVKLQIHRKAVRELLLTERVYVDGIPAKALDLLVDEFSHIVFDGQVLQANKPV- 65

Query: 62  YLMLYKPTGCVSATHDPQHRTVLDLLPAALRDDLHIAGRLDFNTTGLMILTNDGQWSRRL 121
           YLML+KP G VSAT D +HRTV+DLL    R +LHIAGRLD N++GL++LTND +WS  L
Sbjct: 66  YLMLHKPVGVVSATKDTEHRTVIDLLDCDARHELHIAGRLDLNSSGLLLLTNDSRWSEAL 125

Query: 122 TQPATKLPKHYLVDTEDEIGEHYVAKFREGFYFAFEDLTTQPAQLDILGPHRARLAIVEG 181
             P  K+ K Y V   + + E Y+A F +G YF FED+TTQPA+L IL  H A + + EG
Sbjct: 126 MSPDQKVDKVYRVTLANPLSEEYIAAFAQGMYFGFEDITTQPAKLTILDTHIAEVTLREG 185

Query: 182 RYHQVKRMFGHFNNKVIGLHRESMGAIRLDPGLAPGEYRELTANEIATV 230
           +YHQ+KRMFG F N V+GLHR S+G I LD GL PGE R LTA E+A+V
Sbjct: 186 KYHQIKRMFGRFRNPVVGLHRHSIGEITLDDGLKPGESRMLTAQEVASV 234