Pairwise Alignments

Query, 585 a.a., C4-dicarboxylate transport sensor protein from Pseudomonas putida KT2440

Subject, 555 a.a., hypothetical two-component sensor histidine kinase protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  227 bits (579), Expect = 8e-64
 Identities = 149/488 (30%), Positives = 257/488 (52%), Gaps = 21/488 (4%)

Query: 35  QAMEDDAKRASQQLGLYANALHTLIDRYRALPAVLALDPELIAALRGPVDEKVQNALNLK 94
           Q   D  +++ +QL    + L   + RY ++P VL+ +P L   L    + +    LNL 
Sbjct: 36  QGKIDIQQQSEKQLKELVSFLDGALSRYESIPHVLSTNPMLANVLNDQQNPQKVQELNLY 95

Query: 95  LERINGAANSSTLELLDRTGLAIAASNWRLPSSYVGSNYGFRPYFKQTRSQGSGRFYAVG 154
           LE I     +S + L+D  G+AIAASNW+ P S++G +Y FRPY+    S   GR+YAVG
Sbjct: 96  LEEIQHVTEASDIYLIDALGIAIAASNWQQPFSFIGKDYSFRPYYTDAISGNLGRYYAVG 155

Query: 155 VTSGVPGYFLASAVNDEHGR-FLGAMVVKLEFPELEREWRQ----GNDILLVSDARGITF 209
            +S   G++ +  +  + G+  LGA++VK++  ++E++       G    L+SD   I F
Sbjct: 156 TSSDKRGFYFSYPIYQQGGKGILGAIIVKVDIADIEQQSTSIAMAGQYQFLISDPDDIVF 215

Query: 210 IANQDGWRYRELQPLSGADRADLAETRQYDKQPLVPLHHQVLTRFAPYSTLS----RVQG 265
           I++ D WR   L PL+ A +  L  +++Y ++P+  L   +  ++   ST S     ++ 
Sbjct: 216 ISSVDEWRLTSLTPLTQAKQYALNASKRYAERPIGEL--IIKPQYQDDSTSSGHIYHIRE 273

Query: 266 PEGSTEYLWESLPLEGENWTLHLLRKPQVAADGRNA-ALGAAAVWLSLVFAALFVSQRLR 324
                +Y+     +    W +H+L   +   +   A  L +A+++L L    LF S+R R
Sbjct: 274 GNSQAQYMDTHHLMTKAGWRVHILAPLKPLHESMPALMLLSASIYLLLALGLLFSSERRR 333

Query: 325 LARLRQRSRQELERQVEERTRELRTA-------QEGLVQSAKLAALGQMSAAMAHEINQP 377
             +  Q ++  LE++VEERT +L+ A       Q+ L+Q+AKL  +G +SA++ HE+NQP
Sbjct: 334 NLQRMQLAQSLLEQRVEERTYDLQQANDRLKDTQDELIQAAKLTVIGSLSASINHELNQP 393

Query: 378 LTTQRMQLETLRLLLDHGRHDEARQALEPLEQMLTRMAALTSHLKTFARNSPMGLRERLD 437
           L   R   +  +  L     D+A   L+ + ++  R+A +    K+F R S  G     D
Sbjct: 394 LAALRSYAQNTQTFLARNMQDKALDNLKIIIELTDRLADIVGQFKSFTRKS-QGTDSATD 452

Query: 438 LATVVDQALHLLEARLRNEEVEVALYLARPAW-VRGDAIRLEQVLINLLHNALDAMLDKR 496
           L   + QAL +++  +  + VE+ + L    + V GD +RL+QV +N++ NA+ AM    
Sbjct: 453 LKGCIKQALTIVQPEIDKQGVELDVLLPEGQYQVWGDKVRLQQVFVNIMSNAIVAMQQSV 512

Query: 497 YKRLEIRI 504
            ++L IR+
Sbjct: 513 IRKLSIRV 520