Pairwise Alignments

Query, 444 a.a., C4-dicarboxylate transport transcriptional regulatory protein from Pseudomonas putida KT2440

Subject, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  397 bits (1019), Expect = e-115
 Identities = 223/451 (49%), Positives = 294/451 (65%), Gaps = 20/451 (4%)

Query: 5   VIVVDDEASIRTAVEQWLSLSGFSVELFARAEACLAHLPQHFPGVIISDVRMPGMDGLQL 64
           + +++D+  +R A  QWL L+GF V +FA   + LA + Q     ++SDVR+P  DGL L
Sbjct: 6   IALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLSL 65

Query: 65  LERLQANDPDLPVILLTGHGDVPMAVEAMRSGAYDFLEKPFTPQDLLGSLRRALEKRQLV 124
           L  L+     +PVIL+TGHGDV MAV+A+  GA+DF+EKPF P+ L  ++ +A+ + Q  
Sbjct: 66  LVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQNA 125

Query: 125 LENR-RLHEQADLKSRLEGTLLGMSQGLQQLRRQVLDLAGLPVNVLIRGETGSGKERVAR 183
           L ++ R H  A  K  LE  L+G  + +Q LR Q+  +A +  NV+I GETG GKE VA+
Sbjct: 126 LSSQSRAHYLASAKG-LEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184

Query: 184 CLHDFGPRAAKPFVALNCAAIPESLFEAELFGHESGAFTGAQGKRIGKLEYANGGTVFLD 243
           CLH    R    FVA+NC AIPE+LFE+ELFGHE+GAFTGA  +RIGKLE A+ GT+FLD
Sbjct: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244

Query: 244 EIESMPLAQQAKLLRVIQEQKLERLGANQSISVDLRIIAATKPDLLEEARAGRFREDLAY 303
           EIESMPLA Q K+LRV+Q+  +ER+G+NQ I++DLR+IAA K +L + A    FR+DL Y
Sbjct: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQHA---EFRQDLFY 301

Query: 304 RLNVAELRLAPLRERREDIPLLFEHFARAAGEKLGRAAPPLSGAQLAQLLSHDWPGNVRE 363
           RLNVA+L L PLRER +DI LLFEHF      ++      LS A    LL++ WPGNVRE
Sbjct: 302 RLNVAQLYLPPLRERGDDILLLFEHFC----VQVKPTWRSLSEADRLALLTYRWPGNVRE 357

Query: 364 LANAAERHALG---------LGSPNI--EVAPAGQSLGEQMEAFEAQCLRAALRQHGGEI 412
           L N A R+AL             P +  E A AG  L  Q+  FE + +  AL +H G I
Sbjct: 358 LRNVALRYALDDSISVGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQALHRHQGNI 417

Query: 413 KSVMEALQLPRRTLNEKMQRHGLVREDFIGQ 443
             VM+ L LPRRTLN+KMQ+ GL+R DF  Q
Sbjct: 418 SEVMKELDLPRRTLNQKMQKFGLLRGDFTAQ 448