Pairwise Alignments

Query, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

Subject, 388 a.a., HlyD-family protein from Sinorhizobium meliloti 1021

 Score =  186 bits (471), Expect = 1e-51
 Identities = 122/358 (34%), Positives = 198/358 (55%), Gaps = 22/358 (6%)

Query: 31  AAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGIILKRLFKEGSEVKEGQQL 90
           A   P VGV+T+Q +  +   E  GR  A    ++R +V G + +RLF EG  V++GQ L
Sbjct: 28  AQTGPVVGVMTVQVENVSPAHEFVGRVEALNAVDIRARVEGFLERRLFAEGQNVEKGQDL 87

Query: 91  YQIDPAVYEATLANAKANLLATRS---LAERYKQ---LIDEQAVSKQEYDDANAKRLQAE 144
           + ++   YE  L +A+A L+  ++    AER  Q    + ++ VS+   ++++A R  A 
Sbjct: 88  FTLERTTYELALEDAQATLVGAQTNFDNAERQLQRNRALSQRTVSQAVIEESHAARDIAR 147

Query: 145 ASLKSAQ-------IDLRYTKVLAPISGRIGRSSFTEGALVSNGQTDAMATIQQLDPIYV 197
           AS+ SAQ       ++L YT + API GRIGR++++ G+LVS   ++ +A + Q DPI V
Sbjct: 148 ASVLSAQTRVNQAELNLGYTHIKAPIDGRIGRAAYSVGSLVS-PSSEPLARVVQTDPIRV 206

Query: 198 DVTQSTAELLKLRRDLESGQLQKAGDNAASVQLVLEDGSLFKQEGRLEFSEVAVDETTGS 257
             + S   +L L R +  G  +       +++L L +G  ++Q G+LEF    +D  TG+
Sbjct: 207 VFSVSDRTILDL-RTIAGGAGKDELAKGYALKLRLSNGEPYQQSGKLEFFGNEIDVQTGT 265

Query: 258 VTLRALFPNPDHTLLPGMFVHARLKAGVNANAILAPQQGVTRDLKGAPTALVVNQENKVE 317
           + +RALF N    L+PG FV   ++        + P   V +D +G    LVV+ E++  
Sbjct: 266 LPIRALFANAQSLLMPGQFVTVIVEPEEREERPVVPVGSVEQDREGR-FVLVVDGESRAA 324

Query: 318 LRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYVRPGVEVKVSD------ATNVKKPA 369
           +R+++AS  +G +W++EEGL  G++LI EGLQ V PG  V+         AT+   PA
Sbjct: 325 VRRIRASVQVGQNWVVEEGLQGGEKLIVEGLQRVSPGAVVEAQSVSAGDAATDTAAPA 382