Pairwise Alignments

Query, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

Subject, 378 a.a., multidrug resistance protein AcrA/AcrE family (RefSeq) from Shewanella amazonensis SB2B

 Score =  336 bits (862), Expect = 6e-97
 Identities = 188/371 (50%), Positives = 256/371 (69%), Gaps = 20/371 (5%)

Query: 10  LVSAVALATLLSGCKKE--EAAPAAQAPQVGVVTIQPQAF--TLTSELPGRTSAYRVAEV 65
           + SA+ +   +S C+++  +AA   Q P + V T+Q  A    +  ELPGR+ A+  AEV
Sbjct: 7   IASAIGMVLWVSACQEDAQQAANQQQMPPMEVGTVQVTAAPQNIMVELPGRSRAFLEAEV 66

Query: 66  RPQVNGIILKRLFKEGSEVKEGQQLYQIDPAVYEATL-------ANAKANLLATRSLAER 118
           RPQV+GII++R F EG EVKEGQ LY+ID A Y+ATL       A+A+A+L + ++ A R
Sbjct: 67  RPQVSGIIMERNFVEGREVKEGQSLYKIDDATYKATLESAKADLASAQASLASAKARAAR 126

Query: 119 YKQLIDEQAVSKQEYDDANAKRLQA-------EASLKSAQIDLRYTKVLAPISGRIGRSS 171
           Y++L+   A+SKQ++D+A+A   +A       EA L +A I+L YT+V APISGRIG+SS
Sbjct: 127 YEKLVKTNAISKQDFDEADAAYKEALARVKVAEAQLHTANINLNYTEVQAPISGRIGKSS 186

Query: 172 FTEGALVSNGQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKAGDNAASVQLV 231
            T GALV+  Q   +ATIQQLDPI VD+TQS+A+LL L+  L +G+LQ A DNA  VQLV
Sbjct: 187 VTPGALVTANQGQVLATIQQLDPINVDITQSSAQLLALKAKLRAGKLQ-AADNA-EVQLV 244

Query: 232 LEDGSLFKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNANAIL 291
           LEDG+ ++ +G+L+F+EV+VDE TGSV LRA FPNPD+ LLPGM+V A L  GV+ NAIL
Sbjct: 245 LEDGTTYEHKGKLQFAEVSVDENTGSVILRAEFPNPDNVLLPGMYVRAMLNTGVDPNAIL 304

Query: 292 APQQGVTRDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYV 351
            PQ+ +TR+ +G   A+VVN E+KVE R +  +  +   W I  GLN GD+LI EGLQ +
Sbjct: 305 VPQKAITRNTRGEAVAMVVNAESKVEARTVTTAEVINHQWRITSGLNAGDKLIVEGLQKI 364

Query: 352 RPGVEVKVSDA 362
           RPG  V  + A
Sbjct: 365 RPGAPVTATAA 375