Pairwise Alignments

Query, 484 a.a., Probable efflux pump outer membrane protein TtgC from Pseudomonas putida KT2440

Subject, 457 a.a., outer membrane protein oprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  201 bits (512), Expect = 3e-56
 Identities = 140/467 (29%), Positives = 222/467 (47%), Gaps = 15/467 (3%)

Query: 1   MTKSLLSLAVTAFILGGCSLIPDYQTPEAPVAAQWPQGPAYSPTQSADVAAAEQGWRQFF 60
           + K  +++ + A IL  C +   Y  P+  +     Q           V+  +Q W + +
Sbjct: 3   LNKLYIAILLFAGILTSCKVGKSYVRPDLHLPDSLAQ-------HQDTVSFGDQDWEEIY 55

Query: 61  HDPALQQLIQTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGSGSRQRVPANMS 120
            D  L+ LI  +L +N+D+ +AA  +    AQ RI  A L P +    +  R+      +
Sbjct: 56  TDSTLRSLIDRALDHNKDMLIAAARIKEMAAQKRISTAALLPDIKGKVTAERELE----N 111

Query: 121 QTGESGITSQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIALVASVANA 180
             G++   S       + ++ELDL+G +R     ++  YL S +A+R+ Q+ +VA VA A
Sbjct: 112 HGGDAFKKSDTFEAQFLVSWELDLWGNLRWARSASIAEYLQSVEAQRALQMTIVAEVAQA 171

Query: 181 YYTWQADQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKYSQYQ 240
           YY   A      + ++TLK  EE   L R   E G+ S     QA+  +          +
Sbjct: 172 YYELVALDTELDIVKQTLKAREEGVRLARIRFEGGLTSETSYRQAQVELARTATLVPDLE 231

Query: 241 RLVAQDVNSLTVLLGTGIPADLAKPLELDADQLAE-VPAGLPSDILQRRPDIQEAEHLLK 299
           R ++   N +  L G   P  +A+   L      E +P G+PS +L+RRPDI++AE  L 
Sbjct: 232 RKISLKENDIAFLAGE-YPNRIARSRLLQEFNFPETLPIGMPSTLLERRPDIRQAEQKLI 290

Query: 300 AANANIGAARAAFFPSISLTANAGSLSPDMGHLFSGGQGTWLFQPQINLPIFNAGSLKAS 359
           AANA +G A    FP ++LT   GS S  +  L        + +  +  PIF  G  +A+
Sbjct: 291 AANAKVGVAYTNMFPRLALTGGFGSESTSLSELLKSPYA--VMEGALLTPIFGWGKNRAA 348

Query: 360 LDYSKIQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQANQDYYRLAERR 419
           L   K   +  +  YEKT+ TAF+E  + +      +E    + +L ++ + Y  LA+ +
Sbjct: 349 LKGKKAAYEAEIHSYEKTVLTAFKETRNAIVNFNKIKEVYALRANLERSAKSYMDLAQLQ 408

Query: 420 YRIGIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALGGGW 466
           Y  G+ + L  LDAQR  F AQ  L      +L + V LYKALGGGW
Sbjct: 409 YINGVINYLDVLDAQRGYFDAQIGLSNAIRDELITVVQLYKALGGGW 455