Pairwise Alignments

Query, 624 a.a., Methyl-accepting chemotaxis protein PctA from Pseudomonas putida KT2440

Subject, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  268 bits (684), Expect = 7e-76
 Identities = 197/637 (30%), Positives = 335/637 (52%), Gaps = 43/637 (6%)

Query: 5   LRFSHKILLAASLIVILAFSLFTLY-----NDYLQR---NAIREDLENYLAEMGASTSTN 56
           ++FS K+L+  + I+I   S+ T +     N+YL R   + I E L++   ++  S  + 
Sbjct: 1   MKFSIKLLMIFTSIIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKINLSIESK 60

Query: 57  IRNLFEGRIKLVENLAQNIAQDPANAETLMGQNALISSF-LTVYLGKVDGGFSVR-PDAK 114
           + ++ +  I + ENL +   + P +    +  N L + F L  Y  +  G      P+ K
Sbjct: 61  V-DVSKSVIDIYENLLEG--ESPLSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFK 117

Query: 115 MPDGYDPRTRPWYKDGMNASGATLTEPYIDMTTNKMVIGILSKVSSS---VGVVGGDLAL 171
           +P G+DPRTR WY +    +  +L+EPY+D+ T K+++   + + +     GV+  D+ L
Sbjct: 118 VPTGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDIPL 177

Query: 172 DGLVQIINSLNFGGMGYAFLVNDQGKILVHPDKDLVMKSLS---DLFPQHTPKL-TGELT 227
           D + ++I S N    G  F+V++ GKI+     D+  K+L    D FP    +  T +  
Sbjct: 178 DDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSESKTKDKN 237

Query: 228 EVQSDGQTRLLTFSPITGLPSANWYIGLSVDKDKAFSMLSTFRTSAVIATVVAVVIIIGL 287
            V  D   ++  F          W +   +D DKA S + T R +++   V+   +   +
Sbjct: 238 GVNYDVLIKMSDFG--------GWNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAI 289

Query: 288 LGLLIRVLMQPLHTMTRAMEDIAEGEGDLTKRLHIHSHDEFGVLGNAFNRFVERIHSSIR 347
           L   +R++++PLH +T AM +I+ G  DLT R+   +  EF  + N+FN FV  + S + 
Sbjct: 290 LLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVS 349

Query: 348 EVSSATEQVNEVALR---VISASNSSMTNSDEQSNRTNSVAAAINELGAAAQEIAGNAAQ 404
           EV   +E++N +      ++   N+S+    +Q    + +A+++NE+ A + +IA   ++
Sbjct: 350 EVKMNSEKINCITTETQELVEVCNNSVA---DQYRELDMLASSMNEMVATSNQIAQITSE 406

Query: 405 ASQHASSARLLAEEGQQVVERNIAAMNRLSDLIVTSSAHIETLNSKTVNIGQILEVITSI 464
           AS+  S       EG   V     ++  L + +  + + I+ LN +T NI  IL+ I  I
Sbjct: 407 ASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDI 466

Query: 465 SQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAQQVQTMIEELQVGARES 524
           + QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQES + + ++I  LQ  +  S
Sbjct: 467 ADQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLS 526

Query: 525 VDTMEQSQRHSQDSMQIANQAGERLDSVTVRIGEIDGMNQSVATATEEQTAVVEAINMDI 584
           V  M++S   + ++M I+  + + LD+++  + +I  +   VATA  EQ+ V E IN   
Sbjct: 527 VHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINS-- 584

Query: 585 NEINMLNQEGVENLQATLRACSD-LEQQAGRLKHLVG 620
                 N   +++   TL +  + + QQA   K L+G
Sbjct: 585 ------NSISIKDKADTLSSLGNKISQQAYSQKALIG 615