Pairwise Alignments

Query, 624 a.a., Methyl-accepting chemotaxis protein PctA from Pseudomonas putida KT2440

Subject, 695 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  227 bits (579), Expect = 1e-63
 Identities = 169/568 (29%), Positives = 272/568 (47%), Gaps = 59/568 (10%)

Query: 104 DGGFSVRPDAKMPDGYDPRTRPWYKDGMNASGATLTEPYIDMTTNKMVIGILSKV----S 159
           DGGF    + +MP GYDPR R WY+  ++  G  +T+ Y   TT + V   + ++     
Sbjct: 127 DGGFLAGSEMQMPAGYDPRKRGWYQAAVSGDGIQMTDAY-KSTTGEAVTSAVGRIVDASG 185

Query: 160 SSVGVVGGDLALDGLVQIINSLNFGGMGYAFLVNDQGKILVHP-DKDLVMKSLSD----L 214
            ++G  G D+ L  L ++I ++  G  GY  L+ D G +L    D   + K +++    L
Sbjct: 186 RTIGAAGIDINLSTLTKVIANIRIGETGYVVLIEDSGVVLSDSKDPANLFKKVTEIQDNL 245

Query: 215 FPQHTPKLTGELTEVQSDGQTRLLTFSPITGLPSANWYIGLSVDKDKAFSMLSTFRTSAV 274
           F        G + E +  G+ RL+  S +TG     W + + +D D+ F+         V
Sbjct: 246 FRDAFAMREG-VFEAKLGGKERLV--SVLTGFEG--WKLVVIIDTDEIFAESRAIVLKIV 300

Query: 275 IATVVAVVIIIGLLGLLIRVLMQPLHTMTRAMEDIAEGEGDLTKRLHIHSHDEFGVLGNA 334
               V  +I++     + R +  P+  + RA  DIA G  +        S  E   L  +
Sbjct: 301 GVGAVIALILVVCAWFISRTIANPIDLLVRASGDIAAGNFNALPESSRFS-GELLTLHGS 359

Query: 335 FNRFVERIHSSIR------------------------EVSSATEQVNEVAL--------- 361
             R VE +   I+                        E   A EQ     +         
Sbjct: 360 LKRMVESLGELIKTAEAKSQEAEQQTALAKTALEEAEEARKAAEQAKRNGMLQAARDLQG 419

Query: 362 --RVISASNSSMTNSDEQ--------SNRTNSVAAAINELGAAAQEIAGNAAQASQHASS 411
              VISA++  +    EQ        S RT   A A+ E+ A   E+A +A  A++ +++
Sbjct: 420 IVEVISAASEELAAQIEQASRGAEFQSQRTGETATAMEEMNATVLEVARSAGSAAETSAN 479

Query: 412 ARLLAEEGQQVVERNIAAMNRLSDLIVTSSAHIETLNSKTVNIGQILEVITSISQQTNLL 471
           AR  AE G  +V   +  +N ++         ++ L  +  +IG+I+ VI  I+ QTNLL
Sbjct: 480 ARDNAEVGAGIVRDMVKGINSVNQYAERLQQDMDVLGRRAEDIGRIINVINDIADQTNLL 539

Query: 472 ALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAQQVQTMIEELQVGARESVDTMEQS 531
           ALNAAIEAARAGEAGRGFAVVADEVR LA +T  + ++V   I  +Q G RES + ++Q+
Sbjct: 540 ALNAAIEAARAGEAGRGFAVVADEVRKLAEKTMAATKEVSDAIGGIQSGTRESFEQVQQT 599

Query: 532 QRHSQDSMQIANQAGERLDSVTVRIGEIDGMNQSVATATEEQTAVVEAINMDINEINMLN 591
            +       +A +AG  L ++     +     +S+ATA+EEQ+A  E I   ++EIN + 
Sbjct: 600 VKEVVTVTTMAEKAGNSLATIVQLSDKSSDQVRSIATASEEQSAASEEIAHAVDEINRIT 659

Query: 592 QEGVENLQATLRACSDLEQQAGRLKHLV 619
            E  + ++ + +A ++L +QA RLK+++
Sbjct: 660 AETSDAMRQSAQAVTELAEQAQRLKNII 687



 Score = 41.6 bits (96), Expect = 1e-07
 Identities = 37/202 (18%), Positives = 79/202 (39%), Gaps = 14/202 (6%)

Query: 346 IREVSSATEQVNEVALRVISASNSSMTNSDEQSNRTNSVAAAINELGAAAQEIAGNAAQA 405
           +R++      VN+ A R+    +     +++     N +    ++    A   A  AA+A
Sbjct: 491 VRDMVKGINSVNQYAERLQQDMDVLGRRAEDIGRIINVINDIADQTNLLALNAAIEAARA 550

Query: 406 SQHASSARLLAEEGQQVVERNIAAMNRLSDLI--------------VTSSAHIETLNSKT 451
            +      ++A+E +++ E+ +AA   +SD I                +   + T+ +  
Sbjct: 551 GEAGRGFAVVADEVRKLAEKTMAATKEVSDAIGGIQSGTRESFEQVQQTVKEVVTVTTMA 610

Query: 452 VNIGQILEVITSISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAQQVQ 511
              G  L  I  +S +++    + A  +     A    A   DE+  +   T ++ +Q  
Sbjct: 611 EKAGNSLATIVQLSDKSSDQVRSIATASEEQSAASEEIAHAVDEINRITAETSDAMRQSA 670

Query: 512 TMIEELQVGARESVDTMEQSQR 533
             + EL   A+   + +E  QR
Sbjct: 671 QAVTELAEQAQRLKNIIETMQR 692



 Score = 36.2 bits (82), Expect = 5e-06
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 21/133 (15%)

Query: 328 FGVLGNAFNRFVERIHSSIREVSSAT-----------EQVNEVALRVIS-------ASNS 369
           F V+ +   +  E+  ++ +EVS A            EQV +    V++       A NS
Sbjct: 557 FAVVADEVRKLAEKTMAATKEVSDAIGGIQSGTRESFEQVQQTVKEVVTVTTMAEKAGNS 616

Query: 370 SMTN---SDEQSNRTNSVAAAINELGAAAQEIAGNAAQASQHASSARLLAEEGQQVVERN 426
             T    SD+ S++  S+A A  E  AA++EIA    + ++  +       +  Q V   
Sbjct: 617 LATIVQLSDKSSDQVRSIATASEEQSAASEEIAHAVDEINRITAETSDAMRQSAQAVTEL 676

Query: 427 IAAMNRLSDLIVT 439
                RL ++I T
Sbjct: 677 AEQAQRLKNIIET 689