Pairwise Alignments

Query, 939 a.a., protein translocation complex, ATPase subunit SecA from Pseudomonas putida KT2440

Subject, 844 a.a., preprotein translocase subunit SecA (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  865 bits (2235), Expect = 0.0
 Identities = 477/913 (52%), Positives = 603/913 (66%), Gaps = 75/913 (8%)

Query: 29  MFAPLLKKLFGSKNEREVKRMLKTVSIVNAFEEKMVALSDEQLRGKTAEFKERLAKGETL 88
           MF  L K +FGS N+R +KR    V  +NA E +M AL+DE    + AE++E+   G +L
Sbjct: 1   MFDTLFKSIFGSSNDRYIKRCRTRVEAINALEPQMQALADEDFPARIAEYREQAQNGRSL 60

Query: 89  DQLLPEAFAVAREAGKRVMGMRHFDVQLIGGMTLHEGMIAEMRTGEGKTLVGTLAVYLNA 148
           D LLPE FA+ REAGKR + MRHFDVQL+GGM LHEG IAEM+TGEGKTLV TL V LNA
Sbjct: 61  DDLLPEVFALTREAGKRALNMRHFDVQLVGGMVLHEGRIAEMKTGEGKTLVATLPVVLNA 120

Query: 149 LSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVSAFQPPEEKRAAYAADITYGTNN 208
           +SG GVHVVTVNDYLA+RDA WM  LY FLGLSVG++      EE++ AY ADITYGTNN
Sbjct: 121 ISGLGVHVVTVNDYLAKRDAAWMGRLYNFLGLSVGVIVHGLSDEERKEAYGADITYGTNN 180

Query: 209 EFGFDYLRDNMAFSQDEKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEIN 268
           EFGFDYLRDNM F   +  QRE NFA++DEVDSILIDEARTPLIISG +EDS+ LY  ++
Sbjct: 181 EFGFDYLRDNMKFYPHQLVQREHNFAIVDEVDSILIDEARTPLIISGPSEDSTGLYRRVD 240

Query: 269 RLIPRLTQHIEEVEGQVTQEGHFTIDEKSRQVELNEAGHQFIEEMLAQAGLLAEGESLYS 328
            +IP+L           + E HF++DEK+R   L + G    EE+L         ++L+ 
Sbjct: 241 DIIPKL-----------SPEAHFSVDEKARTATLTDEGVAKCEELLGI-------DNLFD 282

Query: 329 AHNLGLLTHVYAGLRAHKLFHRNVEYIV-QDGQVLLIDEHTGRTMPGRRLSEGLHQAIEA 387
             N+    HV   L+AH +F R+V+YIV  + QV+++DE TGR MPGRR S+GLHQA+EA
Sbjct: 283 PGNITFQHHVLQALKAHHVFRRDVDYIVTPEDQVVIVDEFTGRLMPGRRFSDGLHQALEA 342

Query: 388 KENLNIQAESQTLASTTFQNYFRLYTKLSGMTGTADTEAFEFQSIYGLNVMVIPPNKPLA 447
           KE + ++AE+QTLAS TFQNYFR+Y KL+GMTGTADTEA EFQ IYGL V+ IP NKP+ 
Sbjct: 343 KEKVKVEAENQTLASITFQNYFRMYKKLAGMTGTADTEAVEFQQIYGLQVITIPTNKPMV 402

Query: 448 RKDYNDLVYLTADEKYAAIIADIKESMKLGRPVLVGTATIETSEHMSNLLKKEGIDHKVL 507
           RKDY D +Y T  EK+ AI+A I E  K G+PVLVGT +IETSE +S +LKK G+ H VL
Sbjct: 403 RKDYPDSIYRTRREKFEAIVAAIGELHKSGQPVLVGTISIETSELLSAMLKKTGVPHNVL 462

Query: 508 NAKYHEKEAEIIAQAGAPGALTIATNMAGRGTDILLGGNWEAEVAALENPTAEQIAQIKA 567
           NAK+HE+EAEI+AQAG  G +TIATNMAGRGTDI+LG                       
Sbjct: 463 NAKHHEQEAEIVAQAGQRGKVTIATNMAGRGTDIVLG----------------------- 499

Query: 568 DWQKRHQQVIETGGLHVIASERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDSLMRIFA 627
                 + V E+GGLH++ +ERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED LMR+F 
Sbjct: 500 ------EGVRESGGLHILGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRLFG 553

Query: 628 SDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEYDDVANEQRKVI 687
           SDR+   M+ LGM+ GE IE+RMV+ AIE AQ++VEG NF+IRK LL+YD+V N+QR+VI
Sbjct: 554 SDRISGLMQKLGMEEGEPIENRMVSRAIENAQKRVEGHNFEIRKTLLDYDNVMNQQREVI 613

Query: 688 YHMRNSLLAAENIGDTIVEFRKEVLDATISQHIPPQSLPEQWDVAGLEASLASDFAIK-- 745
           Y +R   +   ++ +T VEF  ++ D         +        A   A L   F I   
Sbjct: 614 YTLRRETMMEADLEETAVEFMDDLFDEIYGDAEQGKGSEGDDAKAYAMARLRDVFNITRV 673

Query: 746 LPIRQWLDEDDHLYEETLREKLLSEITTAYTEKEDQAGLEALRTFEKQILLRVLDDLWKD 805
           LP+      D     ET R  +LS +      K D    E  R   +  LL  +D  WK+
Sbjct: 674 LPLTDGQLPD----RETARGAVLSILDEL---KRDTG--EVYRDILRFFLLEEVDRCWKE 724

Query: 806 HLSTMDHLRHGIHLRGYAQKNPKQEYKRESFSLFQELLESIKRDTIRVLSHVQVRREDPA 865
           HL  MDHLR GI LRGY Q++PKQEYKRE FSLFQE+L  ++ +  R L+ ++++RE+ A
Sbjct: 725 HLLNMDHLRDGIGLRGYGQRDPKQEYKREGFSLFQEMLFRVRENLFRALTRLRIQREEQA 784

Query: 866 EEEARLRREAEELASRMQFQHAAAPGLGSEQLSEEGAEVAVASAPV--RNDQKLGRNEPC 923
                     EEL  + +F+H   P    + L+  GA+    SA    R + K+GRN+PC
Sbjct: 785 --------PPEEL--KQEFKHKEEP----KSLNYSGAQKETPSAAPERRGEPKVGRNDPC 830

Query: 924 WCGSGKKFKHCHG 936
            CGSG+K+K C G
Sbjct: 831 PCGSGQKYKKCCG 843