Pairwise Alignments

Query, 450 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase from Pseudomonas putida KT2440

Subject, 465 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD from Phaeobacter inhibens DSM 17395

 Score =  158 bits (400), Expect = 3e-43
 Identities = 149/467 (31%), Positives = 214/467 (45%), Gaps = 62/467 (13%)

Query: 14  VVGLGKSGMSLVRFLASRGIAFAVADTREQPPELETLRRDYPQVEVRCGELDVDFLCRAN 73
           V+GLG+SG +  R L   G      D             D P    R  E++  F+CR  
Sbjct: 14  VLGLGRSGFATARALREGGAEPVCWD-------------DNPGARARA-EVE-GFVCRDL 58

Query: 74  E----------LYVSPGLA----LATPALQQAAARGVKLSGDIELFARHA---------K 110
           +          L VSPG+        P +  A   GV +  DI LF R           +
Sbjct: 59  QKAGAFDDIASLVVSPGIPHLYPKPNPVIHAALVAGVPVDNDIGLFFRSVATRGWERFDQ 118

Query: 111 AP-IVAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTPALDLLADDIE-LYVLELSSF 168
           AP IVA++GSN KST   L+  +  +AG+   + GN+G   LD+       + VLELSS+
Sbjct: 119 APRIVAVTGSNGKSTTVALLHHILQEAGRESQLAGNIGRGVLDIDPPGSGGIVVLELSSY 178

Query: 169 QLETTDQLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGA---RQVVVNRQDA---L 222
           Q +    L  +VA   N+S DH+DR++G+  Y  AK R+F      R ++   +D    L
Sbjct: 179 QTDLARALTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRAIIGVDEDEGLYL 238

Query: 223 SRPLPVEGRPCWTFGLNPPDFKAFGLR-EVDGEKYLAFEFQTLMPARELKVR------GA 275
           +  L           ++    K  GL  +V   K    E++    A  + +R      GA
Sbjct: 239 AGQLSEAASDDRVIRISASQ-KLTGLGWQVFARKGFLSEYRKGRQAASIDLRQMQGLPGA 297

Query: 276 HNQSNALAALALGHAAGLPFEPMLEALREFGGLAHRCQWVRERNGVNWYDDSKATNVGAA 335
           HN  NA AA A   A GL    + +AL  + GL HR Q +    GV + +DSKATN+ +A
Sbjct: 298 HNHQNACAAYAAARALGLAPRLIEDALASYPGLPHRSQTIATHAGVRYVNDSKATNLDSA 357

Query: 336 LAAIEGLGADIEGKLVLIAGGDGKGAEFTALREPVKRFCRAVVLLGRDAERLAEALGDAV 395
           + A+          +  I GG  K     ALR    +  +A V +GR+A   A  L D  
Sbjct: 358 VKALSAF-----DNIRWICGGLEKDGGLEALRGQTGKVRKAYV-IGREAAGFAMQL-DVE 410

Query: 396 PLVRVKTLDDAVQQCAELAQAGDAVLLSPACASLDMFKNFEERGRLF 442
             V + T+ +AV + +  A+ GD VLL+PA AS D + NFE+RG  F
Sbjct: 411 AEVCI-TMAEAVARASAEAETGDTVLLAPAAASFDQYDNFEQRGEDF 456