Pairwise Alignments

Query, 455 a.a., D-alanyl-D-alanine-adding enzyme from Pseudomonas putida KT2440

Subject, 488 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (NCBI) from Rhodospirillum rubrum S1H

 Score =  243 bits (621), Expect = 8e-69
 Identities = 178/462 (38%), Positives = 236/462 (51%), Gaps = 21/462 (4%)

Query: 4   PLSLSQLTTALKGQHIG--GDATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAK 61
           PL L    TA     I   G  T TGV IDSR+V AG LF+ALAG R DGH ++      
Sbjct: 13  PLVLWTAATAAAALGIAASGAWTATGVCIDSRAVVAGDLFIALAGERTDGHAHVEAALTA 72

Query: 62  GAVAALVEREVADVDLPQLQVADCRL-ALGQLGALNRAAFDKPVVAITGSSGKTTVKEML 120
           GA AALV R  A +   +L V +  L  L  L   +RA F   +V +TGS GKT  KEML
Sbjct: 73  GASAALVSRIPAGIATDRLLVVEDTLEGLWALARASRARFAGKLVGVTGSLGKTGTKEML 132

Query: 121 ASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVGLTQPQV 180
              L   G VHAT GNLNN  G PLTL  +  +   AVIELG +  GE+     L +P V
Sbjct: 133 TQALGRFGRVHATEGNLNNHFGLPLTLARMPADTDLAVIELGMNHPGELGPLARLARPHV 192

Query: 181 VIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGGIAILNLDDKAFDIWK---ARAGAHK 237
            II N    H+  F   + I +AK EILEG+  GG  +LN D++ F+  +   A  G  K
Sbjct: 193 AIITNVAAVHLEFFDSVEAIADAKAEILEGVEPGGTVVLNRDNRFFERLRRAAAARGIDK 252

Query: 238 VVSFARSNPKADFHASDIGRDARGCPSFTLHGAGETVAVQLNVLGEHNVSNALAAAAAAH 297
            +SF  ++  AD    D   DA G   F L G  + +A ++ V G H   N+L   A   
Sbjct: 253 TLSFG-NHIGADARVLDCAVDANGTAVFALIG-DDPLAYRMAVEGRHWALNSLGVLAVVR 310

Query: 298 AVGLSLSGIAAGLAAVQPVKGR----TVAQIAPNGVRVIDDSYNANPTSMCAAIDILA-- 351
           A+GL +   A GLA V P +GR    +V+      ++VIDD+YNA+P S+ AA+  L+  
Sbjct: 311 ALGLDIHSAANGLANVVPPRGRGRRQSVSLGGDGAIQVIDDAYNASPESVIAALTTLSMT 370

Query: 352 --GFSGRTVLVLGDIGELGQWAEEGHRQVGDYA--RGKVDALYAVGSNMTHAVKAFGAN- 406
             G  GR + VLGD+ ELG  A + H  +   +  RG +D +Y  G  M H   A  A+ 
Sbjct: 371 RPGPRGRRIAVLGDMLELGPQAAKLHADLAKISVERG-IDLVYTAGPLMAHLHDALPASR 429

Query: 407 -GRHFATQAELIDAVSAENASDTTILIKGSRSAAMENVVAAL 447
            G H      L   V A       +++KGS+ + +   V AL
Sbjct: 430 RGGHAPDADALTPLVLAALRPGDVVMVKGSKGSLVSRTVTAL 471