Pairwise Alignments

Query, 455 a.a., D-alanyl-D-alanine-adding enzyme from Pseudomonas putida KT2440

Subject, 456 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (RefSeq) from Shewanella loihica PV-4

 Score =  345 bits (885), Expect = 2e-99
 Identities = 207/455 (45%), Positives = 273/455 (60%), Gaps = 8/455 (1%)

Query: 4   PLSLSQLTTALKGQHIGGDATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAKGA 63
           PL LS+L   L  +HIG D + + VS DSR V A  LFVAL G RFD HD+ A     GA
Sbjct: 3   PLKLSELAKVLNAKHIGDDLSVSKVSSDSRVVDAQTLFVALKGERFDAHDFAAKAVMDGA 62

Query: 64  VAALVEREVADVDLPQLQVADCRLALGQLGALNRAAFDKPVVAITGSSGKTTVKEMLASI 123
            A LVERE+  +  PQL VA+ + A+GQ+GA  +       VA+TGS+GKT+VKEM+A+I
Sbjct: 63  SALLVERELP-IAAPQLIVANSQKAMGQIGAHVKQCVAPKSVALTGSNGKTSVKEMVATI 121

Query: 124 LRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVGLTQPQVVII 183
           L T+  V  T GN NN++G PLTLL + P+H   V ELGA+ +GEI YT  L QP V ++
Sbjct: 122 LSTQHQVLYTAGNFNNEVGVPLTLLRLEPQHEYGVFELGANHLGEINYTSSLVQPDVAMV 181

Query: 184 NNAGTAHVGEFGGPDKIVEAKGEILEGLGQGGIAILNLDDKAFDIWKARAGAHKVVSFAR 243
           NN  +AH+  FG  + + +AK EI   L + G+A++N DD   D+ +  A +H  +SF+ 
Sbjct: 182 NNVASAHLEGFGSLEGVAKAKSEIFLHLAKDGVAVINADDAFADVMRRAAASHTQLSFSS 241

Query: 244 SNPKADFHASDIGRDARGCPSFTLHGAGETVAVQLNVLGEHNVSNALAAAAAAHAVGLSL 303
               AD  A ++  DA GC  F +    E   V L + G H VSNALAA +   A+GLSL
Sbjct: 242 QGNPADVSADELSADALGCYRFRIAYLDEQRTVSLPLSGRHQVSNALAATSICLALGLSL 301

Query: 304 SGIAAGLAAVQPVKGRTVAQIAPNGVRVIDDSYNANPTSMCAAIDILAGFSGRTVLVLGD 363
             I  GL  +QPVKGR +         +IDD+YNANP S+ AAID L    G   LVLGD
Sbjct: 302 DEIVQGLMRLQPVKGR-MQPTRLGRFLLIDDTYNANPASVGAAIDWLQEIEGNRCLVLGD 360

Query: 364 IGELGQWAEEGHRQVGDYARGK-VDALYAVGSNMTHAVKAFGANGRHFA-TQAELIDAVS 421
           +GELG  A   HRQ+G+ A+ + +DALY++G     + +AF   G+HF    A ++D VS
Sbjct: 361 LGELGDNASLLHRQLGEKAKQQGIDALYSLGELSRASSEAFA--GKHFTDLDALVVDLVS 418

Query: 422 AEN--ASDTTILIKGSRSAAMENVVAALCGASGEK 454
             N      T+L+KGSRSA ME VV AL  A   K
Sbjct: 419 YFNQLTGKVTVLVKGSRSARMERVVEALIAAFERK 453