Pairwise Alignments

Query, 315 a.a., Ribosomal RNA small subunit methyltransferase H from Pseudomonas putida KT2440

Subject, 301 a.a., 16S rRNA (cytosine(1402)-N(4))-methyltransferase from Pedobacter sp. GW460-11-11-14-LB5

 Score =  205 bits (522), Expect = 1e-57
 Identities = 127/307 (41%), Positives = 183/307 (59%), Gaps = 12/307 (3%)

Query: 9   HITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQA 68
           H++V+L   ++ L ++ DG Y+D TFG GGHS+ IL  LGP+GRL+ FD+DP A    QA
Sbjct: 6   HVSVMLQPCIDGLNIKPDGVYVDVTFGGGGHSKEILKHLGPKGRLIAFDQDPDA----QA 61

Query: 69  LAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDGPL 128
               D RF+ + ++F  L   +  +G   +V G+L DLGVSS Q D P+RGFS  ++  L
Sbjct: 62  NIPADDRFIFIDQNFGFLKNNLRLKGFK-QVDGILADLGVSSHQFDVPQRGFSIRHNADL 120

Query: 129 DMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTADLA 188
           DMRM+  + ++AAE + T   +++ ++F  YGE + A  +ARA+V  R +QPFT    L 
Sbjct: 121 DMRMDQHRDLTAAEILNTYTEDKLHKIFGIYGEVKNAKSLARAIVTSRLEQPFTDIDSLK 180

Query: 189 EVLKVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISFHSL 248
             +    P  ++ K  A + FQ LRI VN E+  LE  L+ A D L+ GG L V+S+HSL
Sbjct: 181 SAIAGYIPKGKENKYLA-QVFQALRIEVNAEIQVLEDFLQQAADVLKPGGHLVVMSYHSL 239

Query: 249 EDRIVKLFMRK-LVKGEADNLPRNLPVQHKVFEPKIKLIGKAQFASEAELKANPRSRSAV 307
           EDR VK FM K   +GE +        Q K F     +  KA  A++ E+  N R+RSA 
Sbjct: 240 EDRPVKNFMAKGKFQGEVEK--DFFGNQQKPFN---VITRKAIIATDEEIAQNNRARSAK 294

Query: 308 MRVAEKL 314
           +R+AEK+
Sbjct: 295 LRIAEKI 301