Pairwise Alignments

Query, 342 a.a., putative amino-acid ABC transporter-binding protein YhdW from Pseudomonas putida KT2440

Subject, 344 a.a., amino acid ABC transporter substrate-binding protein from Rhodopseudomonas palustris CGA009

 Score =  353 bits (907), Expect = e-102
 Identities = 174/345 (50%), Positives = 237/345 (68%), Gaps = 8/345 (2%)

Query: 2   KMLKTTLAV-LTAAAALGAVSTAQAG---ATLDAVKKKGFVQCGVSDGLPGFSVPDAQGK 57
           +  +T LA+ L  AA + A +         TL    ++  V CGV+ GLPGFS PD +G 
Sbjct: 4   RTFRTGLAIGLVVAAGIAAAAITYERYDTKTLKRTIRRDAVLCGVNKGLPGFSTPDDKGN 63

Query: 58  IVGIDADVCRAVAAAVFGDATKVKFSQLNAKERFTALQSGEVDVLSRNTTWTSSRDAGMG 117
             G D D CRAVAAA+F D TKV+F  L+A ERF  LQS +VD+LSRN+TW+ SR+    
Sbjct: 64  WTGFDVDFCRAVAAAIFDDPTKVQFVPLDANERFKELQSRKVDILSRNSTWSMSRETNYD 123

Query: 118 LVFAGVTYYDGVGFLVNKKLGVSSAKELDGATICIQAGTTTELNVSDFFRANGLKYTPIT 177
           L F  V YYDG GF+V     + SA ELDG+ +C+Q GTTT+LN++D+FRAN +KY  + 
Sbjct: 124 LYFPAVAYYDGQGFMVPASRKIDSAVELDGSKVCVQNGTTTQLNLADYFRANNMKYQEVK 183

Query: 178 FDTSDESAKSLESGRCDVLTSDKSQLFAQRSKLAAPTEYVVLPETISKEPLGPVVRKGDE 237
            +  D+  K+ + G+CD  T+D SQL+A R       ++++LP+ ISKEPL PVVR+ D+
Sbjct: 184 SEKFDDVVKAYKDGQCDTFTADVSQLYALRKTFEKSGDHIILPDVISKEPLAPVVRQRDD 243

Query: 238 EWFSIVKWTLFAMLNAEEAGITSKNVEAEAKATKNPDVARLLGADGEYGKDLKLPKDWVV 297
           +W  IVKWTL+AM+NAEE GITS+N+  EA  +K PDV RL+G +G +G+DL L KDW  
Sbjct: 244 DWMMIVKWTLYAMINAEELGITSQNI-GEALKSKKPDVMRLVGTEGAFGEDLGLSKDWAA 302

Query: 298 QIVKQVGNYGEVFEKNLGQSTDLKIDRGMNALWNNGGIQYAPPVR 342
           +I++ VGNYGEV+++N+G+   L I RG+N LW+NGGIQYAPP+R
Sbjct: 303 RIIRHVGNYGEVYDRNVGK---LGIPRGLNQLWSNGGIQYAPPIR 344