Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  284 bits (726), Expect = 5e-81
 Identities = 161/390 (41%), Positives = 229/390 (58%), Gaps = 11/390 (2%)

Query: 93  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 152
           F    L + L++ + +LG    TPIQ Q + + L+G+D +  AQTGTGKTAAF + +I +
Sbjct: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67

Query: 153 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 212
             + P  +E    E RAL++ PTREL  Q+     A  K T L +++  GG     QL  
Sbjct: 68  FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNH 127

Query: 213 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 272
           L     DIL+ATPGRLLD      + L  VEV+VLDEADRMLDMGF+P +++++R+  P 
Sbjct: 128 LRGG-VDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPL 186

Query: 273 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYN 332
             RQTL FSATF   +  +A +   +P  V++ P N  +ETV+Q VY V    K +LL  
Sbjct: 187 --RQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSY 244

Query: 333 LVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITV 392
           L+    W++V+VF   +     + E+L  DGI A  ++GD  Q  R + L+ F+ G++  
Sbjct: 245 LIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRA 304

Query: 393 LVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLP 452
           L+ATDVA RG+ I  +  V+N+ +P   +DYVHRIGRTGRAG +G+++S    D+  QL 
Sbjct: 305 LIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLE 364

Query: 453 AIEALLGRKIKCEMPPDELLK---PVPRKH 479
           AIE LL  ++     P E LK   P P  H
Sbjct: 365 AIERLLNTRL-----PQEWLKGFEPSPVVH 389