Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

 Score =  314 bits (804), Expect = 4e-90
 Identities = 171/386 (44%), Positives = 234/386 (60%), Gaps = 2/386 (0%)

Query: 92  RFHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIIS 151
           +F DF L  +++  +   GF YCTPIQA  L   L GQD  G+AQTGTGKT AFL +  +
Sbjct: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69

Query: 152 QLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLK 211
            L  TP  + R   +PRA+I+APTREL +QI  DA  L   TGL      GG  +DKQL 
Sbjct: 70  HLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129

Query: 212 ALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPP 271
            L++   DIL+ T GR++DF ++   +L+ ++ +VLDEADRM D+GFI  +R + R+ P 
Sbjct: 130 KLQSG-VDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPE 188

Query: 272 KSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLY 331
             +R  +LFSAT +  V  LA +   NP  V +EPE      +++ ++  +   K  LL 
Sbjct: 189 PKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQ 248

Query: 332 NLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRIT 391
            L+ +   +R ++FAN K    +I   L  D      L+GDVPQ KR R LE F +G + 
Sbjct: 249 TLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308

Query: 392 VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQL 451
           +LVATDVA RG+HI  ++HV N+ LP+D +DYVHRIGRTGRAG SG SISFA E+ +  L
Sbjct: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368

Query: 452 PAIEALLGRKI-KCEMPPDELLKPVP 476
           PAIE+ +   I   +  P  LL  +P
Sbjct: 369 PAIESYIEHAIPTSDYDPSALLTDLP 394