Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 503 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  274 bits (701), Expect = 4e-78
 Identities = 170/385 (44%), Positives = 228/385 (59%), Gaps = 15/385 (3%)

Query: 93  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 152
           F +  LS  ++  +   GF   TPIQAQ +   L+  D IG AQTGTGKTAAF + +I +
Sbjct: 4   FKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEK 63

Query: 153 LQ---QTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQ 209
           L    + P P+       RAL++APTRELV QIA +     K + L +   VGG+  +KQ
Sbjct: 64  LVADGRRPDPRNI-----RALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQ 118

Query: 210 LKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQT 269
            + L AR  DILVATPGRLLD   R  V L     +VLDEAD+MLD+GFI  +R+I +  
Sbjct: 119 TEQL-ARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLV 177

Query: 270 PPKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSD-KYK 328
           P    RQTLLFSAT    +  LA ++ T+P  VE+ P   A++ VEQ+V+ V G D K  
Sbjct: 178 P--KNRQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTT 235

Query: 329 LLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREG 388
           +L   +T N     ++F+  K    ++ + L   G  AA + G+  Q +R R L++FR+G
Sbjct: 236 ILKQTLTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDG 295

Query: 389 RITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDS 448
            I VLVATDVA RGI I G++HV N+ LPE PD YVHRIGRT R G  G++I+F   D+ 
Sbjct: 296 EIRVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEI 355

Query: 449 YQLPAIEALLGRKIKC---EMPPDE 470
             L  IE L+G +I     E P D+
Sbjct: 356 RLLRDIEKLMGIQIAVASGEAPADQ 380