Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  290 bits (743), Expect = 5e-83
 Identities = 168/394 (42%), Positives = 240/394 (60%), Gaps = 12/394 (3%)

Query: 92  RFHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIIS 151
           +F  +  + E++ A+ + G+   TPIQ   +    RGQD +  AQTGTGKTAAF + I+ 
Sbjct: 2   KFESYSFAPEILQALAECGYETMTPIQRLAIPPVRRGQDVLASAQTGTGKTAAFALPILQ 61

Query: 152 QLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLK 211
           +L  TP  K R   + RALI+APTREL  QIA +  A  K+  L V +  GG   D Q +
Sbjct: 62  KLLDTP--KAREATKARALILAPTRELTEQIANNIKAYAKHLELAVTTVFGGGKTDVQAQ 119

Query: 212 ALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPP 271
            L  +  DI+VATPGRLL+    G + L  VE +VLDEADRMLDMGFI  ++++I+    
Sbjct: 120 KLR-KGTDIIVATPGRLLEHLLAGNLSLAAVEFLVLDEADRMLDMGFIADIQKLIQAC-- 176

Query: 272 KSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLY 331
             ERQTL+FSATF+  V  LA +      ++  +  N A+ TV Q VY V    K +LL 
Sbjct: 177 NKERQTLMFSATFSGGVRKLADEIMKKHTVLTADRHNTAATTVSQVVYPVEQRRKRELLS 236

Query: 332 NLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRIT 391
            L+ +  W+RV+VF+  +++  ++ E+L  DGI +A +  +  Q  R R L+ F EG+I 
Sbjct: 237 ELIGRKNWQRVLVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFTEGKIR 296

Query: 392 VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQL 451
           VLV+T+VA RG+ I  + +V+NF LP  P+DYVHR+GRTGRAG SGV+ISF   ++   L
Sbjct: 297 VLVSTEVAARGLDIPDLEYVVNFDLPFLPEDYVHRVGRTGRAGKSGVAISFVSREEERTL 356

Query: 452 PAIEALLGRKIKCEMPP-------DELLKPVPRK 478
             IE L+G+++K  + P       D LLK + ++
Sbjct: 357 ADIEKLIGQRLKRIVMPGYEVSNRDLLLKQLQKR 390