Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  290 bits (743), Expect = 5e-83
 Identities = 156/372 (41%), Positives = 232/372 (62%), Gaps = 5/372 (1%)

Query: 92  RFHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIIS 151
           RF  F  + E++HAI + G+   TPIQ + +    RGQD +  AQTGTGKTAAF + I+ 
Sbjct: 2   RFESFSFAPEILHAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPILQ 61

Query: 152 QLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLK 211
           ++  +P   +R     RALI+APTRELV Q+A +    ++Y  ++V++  GG+  D Q  
Sbjct: 62  KMFDSPSDTQR--SNTRALILAPTRELVAQVADNIKQYSRYLPISVLTVYGGVKMDTQAA 119

Query: 212 ALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPP 271
            ++ +  DI+VATPGRLL+  Q   ++L  V+ +VLDEADRMLDMGFI  +++I++Q   
Sbjct: 120 KVK-KGADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQV-- 176

Query: 272 KSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLY 331
             +RQ LLFSATF+  V  LA +    P ++ ++ +N  + TV Q VY V    K +LL 
Sbjct: 177 NRDRQNLLFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQVVYPVEQRRKRELLS 236

Query: 332 NLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRIT 391
            L+ +  W++V+VF   ++    + ++L  DGI +A +  +  Q  R R L  F+EG++ 
Sbjct: 237 ELIGKKNWQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKVR 296

Query: 392 VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQL 451
            LVAT+VA RG+ I  + +V+NF LP   +DYVHRIGRTGRAG +GV+IS    ++   L
Sbjct: 297 ALVATEVAARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEERTL 356

Query: 452 PAIEALLGRKIK 463
             IE L+G KI+
Sbjct: 357 ADIEKLIGNKIR 368