Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 474 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  277 bits (708), Expect = 6e-79
 Identities = 154/373 (41%), Positives = 226/373 (60%), Gaps = 4/373 (1%)

Query: 92  RFHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIIS 151
           RF +  L+ E++ A+ ++G+   TPIQ Q +   L+G+D    AQTGTGKTAAF + +I 
Sbjct: 2   RFDELGLAPEILKAVTEMGYAEATPIQQQAIPLVLQGKDLKACAQTGTGKTAAFTLPLIQ 61

Query: 152 QLQQTPPPKERYMGEP-RALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQL 210
           +L             P RAL++APTREL +Q+ +   + TKYT    +   GG+D   Q+
Sbjct: 62  RLLHLDTASPSPAKHPVRALMLAPTRELALQVYESVKSYTKYTHFRSICLFGGVDIKPQI 121

Query: 211 KALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTP 270
             ++ +  + +VATPGRLLD  ++  V  + V+ +VLDEADRMLDMGFIP +++I+   P
Sbjct: 122 AEMK-KGVEFVVATPGRLLDHVEQKSVSFNQVQALVLDEADRMLDMGFIPDIQRILNMLP 180

Query: 271 PKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLL 330
               RQ+LLFSATF++++  LA     +P +VE+   N  ++T+   V+ VA + K  LL
Sbjct: 181 --KTRQSLLFSATFSNEIQRLADTMLQSPILVEVARRNQVNDTITHRVHPVAETRKKDLL 238

Query: 331 YNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRI 390
             L+   +  + +VF   K    R+  +L R GI A  + GD  Q++RI+ L++F+ G  
Sbjct: 239 IKLLRSGEITQTLVFMRTKQGCGRLARELERAGIAADSIHGDKSQNERIKALDAFKNGGC 298

Query: 391 TVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQ 450
            VLVATDVA RG+ ID + +VINF LP  P+DYVHRIGRTGRAG  G +IS     +   
Sbjct: 299 KVLVATDVAARGLDIDHLPYVINFELPHTPEDYVHRIGRTGRAGRQGNAISLVCAHEVGY 358

Query: 451 LPAIEALLGRKIK 463
           L  IE L+  +I+
Sbjct: 359 LADIEKLIKMQIE 371