Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

 Score =  263 bits (673), Expect = 8e-75
 Identities = 146/378 (38%), Positives = 225/378 (59%), Gaps = 11/378 (2%)

Query: 93  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQ-DAIGRAQTGTGKTAAFLISIIS 151
           F +  LS+E++ A+   GF   TPIQ Q +   + G+ D +G+AQTGTGKTAAF I I+ 
Sbjct: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63

Query: 152 QLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLK 211
            + +       +    +ALI+APTREL +Q+A++  ++     LNV    GG   D+Q++
Sbjct: 64  TIDE-------HSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIR 116

Query: 212 ALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPP 271
            L  R   I+V TPGR+LD   R  + L+ V  +VLDEAD ML+MGFI  V +I++    
Sbjct: 117 ELR-RGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSV-- 173

Query: 272 KSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLY 331
            ++++ LLFSAT  D +M LAK +     I++++ + + +   +Q  Y +   DK++LL 
Sbjct: 174 STDKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLS 233

Query: 332 NLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRIT 391
            ++   K    ++F   K +V  +  +L   G  A  L GD+ Q +R +TL+ F+  +I 
Sbjct: 234 RIIDTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKIN 293

Query: 392 VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQL 451
           VLVATDVA RGI I+ ++HV+NF +P++P+ YVHRIGRTGRAG  G +I+F    +  + 
Sbjct: 294 VLVATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKF 353

Query: 452 PAIEALLGRKIKCEMPPD 469
             I+ +   +IK E  PD
Sbjct: 354 KYIQKIAKTEIKREEVPD 371