Pairwise Alignments

Query, 367 a.a., putative Multidrug efflux MFS membrane fusion protein from Pseudomonas putida KT2440

Subject, 348 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  210 bits (535), Expect = 4e-59
 Identities = 121/307 (39%), Positives = 183/307 (59%), Gaps = 1/307 (0%)

Query: 48  QSTNDAYVTADYTVVAPKVAGFIKQVLVEDNQQVTAGQLLATIDARDYQAALDAAQAQLL 107
           + T++AYV AD + ++ KV G + Q  V+DNQ VTAG LLA +D  +++A +  ++A+L 
Sbjct: 31  EHTDNAYVEADISQLSVKVPGLVVQSEVQDNQYVTAGTLLAKLDDSEFRARVLQSEARLA 90

Query: 108 VAQAQSADARATLERQDALIAQAEAAVKAAQAEVAFADHEVNRYSRLAEQGAGTVQNAQQ 167
              A+ A   A L  Q +LIAQA+A V+A +A+V     ++ R S L  +   +  +  +
Sbjct: 91  SVGAELATLEAKLLLQASLIAQAKAGVQATEADVRRVQQQLTRASELRRRDYSSQDDVDR 150

Query: 168 ARSAVDQARARLANAQAARVAARKQVDILTAQVASADGQLKRAEAGLEKAQLDLSYTRIT 227
             +  D A ARLA ++A+  A  +++ +L AQ          A AGLE AQL L  T I 
Sbjct: 151 LTAEFDGAEARLAESRASLAAREQELGVLKAQREQLFAARAEANAGLELAQLQLKDTEIR 210

Query: 228 APVDGMVGERALRVGAYVNPGARLLSVVPLQQAYVVGNFQETQLTHVQPGQPVRISVDTF 287
           AP +G+VG+R   VG YV PG  L S+VP    ++  NF+ETQ+  + PGQPV +S+D F
Sbjct: 211 APFNGIVGKRGAFVGQYVQPGQALFSLVPDGTVWITANFKETQIQAMVPGQPVAVSLDAF 270

Query: 288 SGETLQGHVQSIAPATGVTFAAVKPDNATGNFTKVVQRIPVKIVLDDGQPLLTRLRVGMS 347
                 G + S++PA+G  F+ +  +NATGNFTK+VQRIPV+I L +  P   ++  G+S
Sbjct: 271 PDHDFHGVIDSLSPASGAKFSLLPAENATGNFTKIVQRIPVRIRL-ELPPGEQKVVPGLS 329

Query: 348 VEATIDT 354
              ++DT
Sbjct: 330 AVVSVDT 336