Pairwise Alignments

Query, 367 a.a., putative Multidrug efflux MFS membrane fusion protein from Pseudomonas putida KT2440

Subject, 402 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  181 bits (460), Expect = 2e-50
 Identities = 122/356 (34%), Positives = 190/356 (53%), Gaps = 17/356 (4%)

Query: 5   EPWMISRTIEMTNNRKTLFIGSV----LAVAVLAGIVGPWMFGSDHRQSTNDAYVTADYT 60
           EP  +  + +    R+TL + +     +A+    GI   W   +    ST++AYV  +  
Sbjct: 3   EPPSLPSSDDSDRRRRTLLMSAAALTFIALGAAYGIY--WWTTARFDMSTDNAYVAGNII 60

Query: 61  VVAPKVAGFIKQVLVEDNQQVTAGQLLATIDARDYQAALDAAQAQLLVAQAQSADARATL 120
            V+P++AG +  V  +D   V AGQ+L TID  D + ALD A+A L    A++      L
Sbjct: 61  QVSPQIAGTVTAVHADDTDFVEAGQMLVTIDPTDARLALDQAEATL----AETVRQVRAL 116

Query: 121 ERQDALIAQAEAAVKAAQAEVAFADHEVNRYSRLAEQGAGTVQNAQQARSAVDQARARLA 180
             QD ++A   A V A +  +A    +  R  RLA  GA + +  + AR AV QA A LA
Sbjct: 117 FSQDGVLA---ATVLAQETTLARLREDFARRQRLANTGAVSAEEVKHARDAVTQASAHLA 173

Query: 181 NAQAARVAARKQVDILTAQVASADGQLKRAEAGLEKAQLDLSYTRITAPVDGMVGERALR 240
            A+  + A R  +D+      ++  ++ RA A + +A +    T + APV G V  RA++
Sbjct: 174 GARKQQEANRVLIDMTGL---TSHPRVARAAAQVREAYVAWRRTVVPAPVSGQVARRAVQ 230

Query: 241 VGAYVNPGARLLSVVPLQQAYVVGNFQETQLTHVQPGQPVRISVDTFSGETL-QGHVQSI 299
           VG    PG  L++++PL + +V  NF+E QL  ++ GQPV ++ D +  + + +G V  +
Sbjct: 231 VGQRTTPGTPLMAIIPLDEVWVDANFKEGQLGAMRLGQPVLLTADIYGDDIVYRGTVAGL 290

Query: 300 APATGVTFAAVKPDNATGNFTKVVQRIPVKIVLDDGQPLLTRLRVGMSVEATIDTR 355
           A  TG  F+ +   NATGN+ KVVQR+PV+I LD        LRVG+S+EA +  R
Sbjct: 291 AAGTGAAFSLLPAQNATGNWIKVVQRVPVRIALDPRDLAQRPLRVGLSMEAHVSIR 346