Pairwise Alignments

Query, 301 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

Subject, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

 Score =  104 bits (260), Expect = 2e-27
 Identities = 80/291 (27%), Positives = 133/291 (45%), Gaps = 5/291 (1%)

Query: 5   DMNLLVALDALLDEGSVVGAAQRMNLSPAAMSRTLGRIRDALGDPILVRAGRGLVPTPRA 64
           D+NLLVALDAL+ + SV  AA+ +NLS  AMS  + R+R    D +    GR L+ TPRA
Sbjct: 7   DLNLLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGRELITTPRA 66

Query: 65  LALREQVHGLVEQAGQVFRSRDDVDLVNLDRAFNIRTNDLFIALYGAQLLRMMLAQAPRT 124
            AL   +   +        S D  +    DR F I  +D    ++  +++  +  +AP  
Sbjct: 67  EALAPAIRDALLHIQFSIISWDMFNPAQSDRCFRIILSDFMTLVFFEKVVERVAREAPGV 126

Query: 125 VLRFVPEGSGDDDAVLRNGHIDLIISSAIELGPEIKVQSLFNTYFVGLARVGHPIFDAPI 184
               +P     D+ +LR G +D +I   + +        LF+   V +  + +      +
Sbjct: 127 SFELLPPDDNPDE-LLRRGEVDFLIFPDVFMSSVHPKAKLFDQTLVSVGCLTNEQLLGDL 185

Query: 185 TPERFAAYPQISVSRRGRANGPI--DVALANHKVERRVALITTSFHSAMFSLPDSDLILP 242
           + ER+ +   ++ ++ GRA  P      L  H  +RR+ L+   F+     L  +  I  
Sbjct: 186 SFERYMSMGHVA-AQFGRALKPSVEQWLLLEHGYKRRIELVVPGFNLIPPLLSGTKRIAI 244

Query: 243 IPANILNSVQRLKLPLRSFEIPVPLETVNVMQAWHPRFDNDPAHRWLRQTL 293
           IP  + N   +  +PLR  + P+PL +      W    + D A  W+R+ L
Sbjct: 245 IPLRLANHFAK-SIPLRIVKHPLPLLSFTEAVQWPALHNKDQASIWMREIL 294