Pairwise Alignments

Query, 688 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

Subject, 559 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  265 bits (676), Expect = 6e-75
 Identities = 156/344 (45%), Positives = 212/344 (61%), Gaps = 4/344 (1%)

Query: 345 AIAGLLLVWLTARGVTRPILAVAARLEDIASGEGDLTRRLDYAHQDELGQLTGWFNRFLD 404
           A+ GLLL    A  + RP+  +   L+DIA+GEGDLTRRL    QDELGQL G FNRF+D
Sbjct: 220 AVVGLLL----ANAILRPLHLMKDNLDDIAAGEGDLTRRLTITSQDELGQLAGSFNRFVD 275

Query: 405 KLQPVIAQVKGSLQEARNTADQSAAIASQTSDGMQQQHREIEQVATAANEMSATALDVAH 464
           K+  ++ Q+     +      Q +  A ++   M++Q  E +QVATA NEMS+ A +VA 
Sbjct: 276 KIHGLVRQITDMTSQLTGLVTQVSEQAQRSEQAMERQRHETDQVATAINEMSSAAQEVAR 335

Query: 465 NASQAAQAARAADQASQEGLQLVDSTRQGIDRLAAGMNTAMDEARALEDRSGQIGSVLEV 524
           +A  AA AA+  D+  Q   ++V  + Q I  L   + ++     +L+     I SVL V
Sbjct: 336 SAQGAAVAAQQTDEEGQSAKRVVAGSIQQIHALVNDIRSSGVSLDSLQQDVASIVSVLGV 395

Query: 525 IRTIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQVSVEEIRQVIEGLQQG 584
           IR+IAEQTNLLALNAAIEAARAGEAGRGFAVVADEVR LA RTQ S +EI+ +I+ LQ G
Sbjct: 396 IRSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALASRTQQSTQEIQGMIDRLQSG 455

Query: 585 TQDVVGAMHAGQRQAQDSAARMEQALPALQRIGEAVAVISDMNLQIASAAEEQSAVAEEV 644
           T   V AM         ++ R  +A  +L  + + +  I+ MN QIASAAEEQ+AVAEE+
Sbjct: 456 THAAVEAMRRSSEAGDGTSERANEAGASLDTMAQLIGTINSMNAQIASAAEEQTAVAEEI 515

Query: 645 NRNVAGIRDVTESLAGQADESARISQALNRLANQQQALMEQFRV 688
           NR+V  I    +S+A +    A+ S++L  L  +   L+ QFR+
Sbjct: 516 NRSVHQIAVAVDSVADETQLGAQTSRSLADLGQRLGKLVGQFRI 559



 Score = 47.4 bits (111), Expect = 2e-09
 Identities = 133/603 (22%), Positives = 237/603 (39%), Gaps = 87/603 (14%)

Query: 5   RLSIQWKITLLAGL-CLLAIVALLVATSLTQAHRSAALVNQANTAMLEDSARQRLQAHAE 63
           RLS++ K+  LA L  LL+ V + + T+     +++  V Q    +L + A+  LQ +  
Sbjct: 2   RLSLKAKVLSLAILPVLLSAVIISLTTAFILKEQASKEVQQTRERLLSE-AKATLQNYVA 60

Query: 64  TQALRIQRYFMDAYQYGNGFARL--VQVLKDRG-GSD--LRAELTRQARASLAGNPDVIG 118
                I+  + DA   G+  AR   +++L +   G D       +   R   A +PD +G
Sbjct: 61  VGLTAIKPLY-DAATPGDNEARAQAIKLLSNISYGKDGYFFGYDSETIRLFKANSPDGVG 119

Query: 119 LYLVFQPNALDQQDSH--YLGQDAMGSNESGRFSLYWSQPSPGTLELEAMPETMLGDTSI 176
                  +  D +D +  Y+ +D +   + G   L +S P PG+ +L  +P+  LG T  
Sbjct: 120 ------KSFKDNRDPNGVYVNRDLVKVAKDGTHYLEYSSPLPGSQDL--VPK--LGYTEY 169

Query: 177 GSN-GAAKNRWLTCPQDTARTCMLEPYL-DEVNGRQVLMTSIALPLLEHGKVVGVVGLDI 234
            S    A    +      A+  ++E  + D V G  + +  IA  +L    V+ VVGL +
Sbjct: 170 LSKWDLAVGSSVNLDGIEAQVALVEAKVHDRVQGVILSIVGIAAVVL---LVIAVVGLLL 226

Query: 235 GLANLQQLSV--NGRRDLFDGQGQ------VSIATAAGLLAG--NSRDDSVLGKPMDKSV 284
             A L+ L +  +   D+  G+G       ++     G LAG  N   D + G  + + +
Sbjct: 227 ANAILRPLHLMKDNLDDIAAGEGDLTRRLTITSQDELGQLAGSFNRFVDKIHG--LVRQI 284

Query: 285 ADGLLRVAHPFTPIPDTAP-WQVVLELPESVLQAPAVALNQRLDAHNQNANLTSLLIGLG 343
            D   ++    T + + A   +  +E         A A+N+   A  + A          
Sbjct: 285 TDMTSQLTGLVTQVSEQAQRSEQAMERQRHETDQVATAINEMSSAAQEVAR--------- 335

Query: 344 TAIAGLLLVWLTARGVTRPILAVAARLEDIASGEGDLTRRLDYAHQDELGQLTGWFNR-- 401
                      +A+G      AVAA+  D    EG   +R+      ++  L        
Sbjct: 336 -----------SAQGA-----AVAAQQTD---EEGQSAKRVVAGSIQQIHALVNDIRSSG 376

Query: 402 -FLDKLQPVIAQVKGSLQEARNTADQSAAIASQTSDGMQQQHREIEQVATAANEMSATAL 460
             LD LQ  +A +   L   R+ A+Q+  +A   +    +        A  A+E+ A   
Sbjct: 377 VSLDSLQQDVASIVSVLGVIRSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRA--- 433

Query: 461 DVAHNASQAAQAARAADQASQEGLQLVDSTRQGIDRLAAGMNTAMDEARALEDRSGQIGS 520
                       A    Q++QE   ++D  + G       M  + +      +R+ + G+
Sbjct: 434 -----------LASRTQQSTQEIQGMIDRLQSGTHAAVEAMRRSSEAGDGTSERANEAGA 482

Query: 521 VL----EVIRTIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQVSVEEIRQ 576
            L    ++I TI      +A  A  + A A E  R    +A  V  +A  TQ+  +  R 
Sbjct: 483 SLDTMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQTSRS 542

Query: 577 VIE 579
           + +
Sbjct: 543 LAD 545