Pairwise Alignments

Query, 433 a.a., component of the Tol biopolymer transport system from Pseudomonas putida KT2440

Subject, 1084 a.a., protease from Vibrio cholerae E7946 ATCC 55056

 Score = 48.9 bits (115), Expect = 8e-10
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 17/133 (12%)

Query: 208 APDGKRIAYVSFEQKRPRIFVQNIDTGRREQVTNFEGLNGAPAWSPDGSRLAFVLSKDGN 267
           +PDG++IA+    Q    I++     G    +T     +  P WSPD   +AF   + G 
Sbjct: 47  SPDGQKIAFTYAGQ----IWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRYGL 102

Query: 268 PDIYVMNVASRQISRVTAGPGINTEPFWGKDGNTLYFTSDRGG-------------KPQI 314
            D++++++   +  R+T     +    +  DG  LYF+S R G               Q+
Sbjct: 103 GDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANVKQGSFMAQL 162

Query: 315 YKQSVSGGGAERV 327
           Y    +GG  +RV
Sbjct: 163 YSVPAAGGREQRV 175



 Score = 48.1 bits (113), Expect = 1e-09
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 250 AWSPDGSRLAFVLSKDGNPDIYVMNVASRQISRVTAGPGINTEPFWGKDGNTLYFTSDRG 309
           A SPDG ++AF  +      I+++         +T     +  P W  D  ++ FT+DR 
Sbjct: 45  ALSPDGQKIAFTYAGQ----IWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRY 100

Query: 310 GKPQIYKQSVSGGGAERVTFVGNYNANPKLSADEKTLVMIHRQQG 354
           G   ++  S+ GG + R+T+ G  +     SAD + L    R+ G
Sbjct: 101 GLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLG 145



 Score = 38.9 bits (89), Expect = 8e-07
 Identities = 47/221 (21%), Positives = 87/221 (39%), Gaps = 26/221 (11%)

Query: 233 TGRREQVTNFEGLNGAPAWSPDGSRLAFVLSKDGNPDIYVMNVASRQISRVT-------- 284
           TG+  Q+T F G +  P WS DGS + ++  + G+ +++       +  ++T        
Sbjct: 223 TGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITDHQKLPVR 282

Query: 285 -AGPGINTEPFWGKDGNTLYFTSDRGGKPQIYKQSVSGGGAERVTFVGNYNANPKLSADE 343
                +  +  +G DG        + G  Q  K  VS   +      G +N N  L A E
Sbjct: 283 FLSASLQGDLAYGFDGEIWRL---KAGAKQAEKVPVSIRRSAMPD--GRHNVNFNLEATE 337

Query: 344 KTLVMIHRQQGF-TNFKVAAQDLQRGSVKILSET-SLDESPTVAPNGTMLIYATRQQGRG 401
             +     +        V    L  G  + +++T   +   + + +G  LIYA+ ++G  
Sbjct: 338 MVVAPNAAEVAIVARGDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSW 397

Query: 402 VLMLVSLNGR----------VRLPLPTAQGEVREPSWSPYL 432
            L    +N            +  P+ T + +V +P +SP L
Sbjct: 398 NLYQSYVNDGGKSFSSSLDIIEEPVLTTEQDVIQPLYSPNL 438



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 15/64 (23%), Positives = 34/64 (53%)

Query: 265 DGNPDIYVMNVASRQISRVTAGPGINTEPFWGKDGNTLYFTSDRGGKPQIYKQSVSGGGA 324
           D   DI+  +  + + +++T   G +  P W  DG+++Y+ S++ G   +++Q   G   
Sbjct: 211 DATRDIWQWSPLTGKHTQITTFRGEDRNPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEP 270

Query: 325 ERVT 328
            ++T
Sbjct: 271 VQIT 274



 Score = 32.3 bits (72), Expect = 8e-05
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 189 GARAVTLLQSREPILSPRFAPDGKRIAYVSFEQKRPRIFVQNIDTGRREQVTNFEGLNGA 248
           G  AV L +S     +P ++PD + IA+ +       +F+ +I  G   ++T + G    
Sbjct: 68  GGDAVALTESGVYSETPIWSPDSQSIAFTADRYGLGDVFILSIQGGESRRLT-YHGAKDI 126

Query: 249 P-AWSPDGSRLAF 260
           P A+S DG +L F
Sbjct: 127 PYAFSADGQQLYF 139



 Score = 29.6 bits (65), Expect = 5e-04
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 16/126 (12%)

Query: 195 LLQSREPILSPRFAPDGKRIAYVSFEQKRPRIFVQNIDTGRREQVTNFEGLNG------A 248
           +L + + ++ P ++P+ KRI Y    + R  + V +I+  +   + +   L        +
Sbjct: 422 VLTTEQDVIQPLYSPNLKRIVY---RENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLS 478

Query: 249 PAWSPDGSRLAFVLSKD---GNPDIYVMNVASRQISRVTAGPGINT-EPFWGKDGNTLYF 304
             WSPD     +++++D    N DI ++     +     +  G +   P +  DG  +Y+
Sbjct: 479 YQWSPDSE---YIVTRDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYW 535

Query: 305 TSDRGG 310
            +D  G
Sbjct: 536 LTDAKG 541