Pairwise Alignments

Query, 433 a.a., component of the Tol biopolymer transport system from Pseudomonas putida KT2440

Subject, 700 a.a., periplasmic component of the Tol biopolymer transport system-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 58.2 bits (139), Expect = 8e-13
 Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 6/100 (6%)

Query: 207 FAPDGKRIAYVSFEQKRPRIFVQNIDTGRREQVTNFEGLNGAPAWSPDGSRLAFV---LS 263
           ++P+ +R+ +VS E +   I+  ++D  RR+  T+ +    +PAWS DGSR+AFV    +
Sbjct: 455 YSPEARRLVFVSNESEHNEIWTSDVDGQRRQMHTSLKRQATSPAWSHDGSRIAFVAADTN 514

Query: 264 KDGNPDIYVMNVASRQISRVTAGPGIN-TEPFWGKDGNTL 302
            +GN  ++++++    I RV A P IN   P W  D + L
Sbjct: 515 HEGN-KLHILDIRDNSI-RVVASPYINHGRPEWSGDDSFL 552



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 12/183 (6%)

Query: 138 QLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSTNNTRYTLQRSDYDGARAVTLLQ 197
           QL D +     Q  E + G+      R L  + E  + N   Y +     +    +T L 
Sbjct: 346 QLADGSERRLTQGIEDIRGLSWHRDGRRLVYSTEE-AGNRGGYLIDTETGE----ITALD 400

Query: 198 SREPILSPRFAPDGKRIAYVSFEQKRPRIFVQNIDTGRREQVTNFEG--LNGAPAWSPDG 255
            ++ +  PRF PD   + +  +   R  + +       +       G        +SP+ 
Sbjct: 401 -QDGLSYPRFVPDSDELVFYHYNNHRQLVSMHPFAEVPQAPFPMIYGNFSQRYADYSPEA 459

Query: 256 SRLAFVLSKDGNPDIYVMNVASRQISRVTAGPGINTEPFWGKDGNTLYF----TSDRGGK 311
            RL FV ++  + +I+  +V  ++    T+     T P W  DG+ + F    T+  G K
Sbjct: 460 RRLVFVSNESEHNEIWTSDVDGQRRQMHTSLKRQATSPAWSHDGSRIAFVAADTNHEGNK 519

Query: 312 PQI 314
             I
Sbjct: 520 LHI 522



 Score = 33.1 bits (74), Expect = 3e-05
 Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 9/169 (5%)

Query: 237 EQVTNFEGLNGAPAWSPDGSRLAFVLSKDG-NPDIYVMNVASRQISRVTAGPGINTE--P 293
           +++T+  G    P+ SPDG  L +   + G N  ++ +++     S     P  + E   
Sbjct: 166 DRLTSDGGSERFPSVSPDGRFLVYGGQQPGKNGSLFQLDLEHPDASPRQLTPDSSDELRA 225

Query: 294 FWGKDGNTLYFTSDRGGKPQIYKQSVSGGGAERVTFVGNYNANPKLSADEKTLVMIHRQQ 353
            W  DG +LYF S   G+ +I +  +  G    +    +      L+ D   L  I    
Sbjct: 226 VWSNDGKSLYFPSASAGECKITRLDLKDGQLTPLADCTSVTTAIDLTVDGTGLAFITTNA 285

Query: 354 GFTNFKVAAQDL---QRGSVKILSETSL---DESPTVAPNGTMLIYATR 396
              N  +   DL   +   V++  +T     D     +P+G  L  A R
Sbjct: 286 PQKNAGIYLLDLTEKEAEPVRLSCDTECPYRDRDFAFSPDGQTLAIARR 334



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 368 GSVKILSETSLDESPTVAPNGTMLIYATRQQGR 400
           G  ++ S+   +  P+V+P+G  L+Y  +Q G+
Sbjct: 164 GVDRLTSDGGSERFPSVSPDGRFLVYGGQQPGK 196