Pairwise Alignments

Query, 433 a.a., component of the Tol biopolymer transport system from Pseudomonas putida KT2440

Subject, 696 a.a., transcriptional regulator, CadC (RefSeq) from Shewanella loihica PV-4

 Score = 42.4 bits (98), Expect = 5e-08
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 237 EQVTNFEGLNGAPAWSPDGSRLAFVLSKDGNPDIYVMNVASRQISRVTAGPGINTEPF-W 295
           + +T+  G  G PA SP  S  A  +  D    +Y+ N+ S     +    GI  +   W
Sbjct: 478 KNITHSLGNVGVPAISPVSSDFAVNIISDTGRTLYIGNIESENFRAIDI-QGIEADNLSW 536

Query: 296 GKDGNTLYFTSDRGGKPQIYKQSVSGGGAERV 327
             DG  LYF      K  IYK +V  G  E++
Sbjct: 537 SADGEALYFKGFAKKKNGIYKLNVKSGELEKI 568



 Score = 32.7 bits (73), Expect = 4e-05
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 210 DGKRIAYVSFEQKRPRIFVQNIDTGRREQVT--NFEGLNGAPAWSPDGSRLAFV 261
           D KR+ Y    Q R  +   N DT   +QV+  +   ++ AP W    ++LAF+
Sbjct: 276 DDKRLLYAKKMQDRVALMAYNFDTAEHQQVSFPDKNEIDYAPKWLDQDTQLAFI 329



 Score = 32.7 bits (73), Expect = 4e-05
 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 16/98 (16%)

Query: 227 FVQNI--DTGRREQVTNFEGLN-------GAPA----WSPDGSRLAFVLSKDGNPDIYVM 273
           F  NI  DTGR   + N E  N       G  A    WS DG  L F         IY +
Sbjct: 499 FAVNIISDTGRTLYIGNIESENFRAIDIQGIEADNLSWSADGEALYFKGFAKKKNGIYKL 558

Query: 274 NVASRQISRVTAGPGINTEPFWGKDGNTLYFTS-DRGG 310
           NV S ++ ++    G+      G+D N LY +  D+ G
Sbjct: 559 NVKSGELEKIPQQQGVYA--IEGQDANHLYLSKFDQNG 594