Pairwise Alignments

Query, 348 a.a., Holliday junction ATP-dependent DNA helicase RuvB from Pseudomonas putida KT2440

Subject, 447 a.a., recombination factor protein RarA from Klebsiella michiganensis M5al

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 61/235 (25%), Positives = 94/235 (40%), Gaps = 43/235 (18%)

Query: 23  IRPLSLDEYIGQPVVR---EQMALFIQAARGRGESLDHTLIFGPPGLGKTTLANIIAHEM 79
           +RP +L +YIGQ  +    + +   I+A       L   +++GPPG GKTTLA +IA   
Sbjct: 20  MRPENLAQYIGQQHLLAPGKPLPRAIEAGH-----LHSMILWGPPGTGKTTLAEVIARYA 74

Query: 80  GVSVKS----TSG-PILERPGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDFQ 134
              V+     TSG   +    + A    N     +LF+DE+HR +   ++   P +ED  
Sbjct: 75  SADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134

Query: 135 LDIMIGEGPAARSIKLDLPPFTLVGATTR--AGMLTNPLRDRFGIVQRLEFYNDKDLSTI 192
           +                    T +GATT   +  L + L  R   V  L+     D+  +
Sbjct: 135 I--------------------TFIGATTENPSFELNSALLSR-ARVYLLKSLTSDDIEQV 173

Query: 193 VS-------RSANILGLAIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGKG 240
           +S       R      + + D+    IA    G  R A   L  + D AE    G
Sbjct: 174 LSQAMSDKTRGYGGQNIVLPDETRKAIADLVNGDARRALNTLEMMADMAESDASG 228