Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 439 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

 Score =  313 bits (801), Expect = 9e-90
 Identities = 189/445 (42%), Positives = 252/445 (56%), Gaps = 41/445 (9%)

Query: 6   WSMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEG--GQSRREE 63
           +S+ AL+++ G++ +   S  + ++GFIE S LS+  R  YF+RDFR+ E   G    EE
Sbjct: 7   FSLTALSLALGSAPVFAQS--ETAEGFIEGSTLSLINRNFYFNRDFRDGESAAGNGYSEE 64

Query: 64  TGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTG----LFPTGSDGRSQDDY 119
              G +  FESG+TQG+VG+G DA  MLGLKLDSG GR+G G    L P  S G  +DD+
Sbjct: 65  WAHGLMAFFESGYTQGSVGIGFDAFAMLGLKLDSGSGRSGVGGSIDLLPHDSAGDPEDDF 124

Query: 120 SKGGGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAG-- 177
           ++ GGAVK R+ DT +K GD F   PV    DSRLLPE  +G  + +N ++ LTL  G  
Sbjct: 125 TRVGGAVKARLLDTEIKAGDVFPTTPVVHFGDSRLLPESFKGVTVVNNSLDDLTLQGGRL 184

Query: 178 HFTSLTAQEQTNRDSFGLKEANV-------VGGTYAFTDNLSTSLYYSKVEDYWRKYYAN 230
           H  S       N D        V        GG Y+  +N+S SLY S+++D W ++Y  
Sbjct: 185 HAMSQPNTSNMNEDFVTFYGGGVDAPWLGYAGGDYSVNENISLSLYTSRLKDAWNQHYFG 244

Query: 231 VNWALPISDNQGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFTLAY 290
            +   P+SD   L+  FN Y    EG      F+     N  +S S     GAHT T +Y
Sbjct: 245 ASATYPLSDIVALLASFNYYKATDEGRELLGEFN-----NNIWSSSLGVAFGAHTVTASY 299

Query: 291 QKVTGDGDYGYGIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMTRY 350
           Q+  G+ D+ Y +    +I+L NS+  SDFN+  E+SW  RYDLN AEYGIPGLTFMTRY
Sbjct: 300 QRNNGNNDFDY-LRQADSIYLNNSIQYSDFNSPKEQSWMLRYDLNMAEYGIPGLTFMTRY 358

Query: 351 VRG--------------SDANVAGTSNGKEWERDVDIKYVLQEGPAKDLSFRVRQATYRS 396
            RG               D N A  +    WERDV+ +YV+Q G  KDLS RVRQAT R+
Sbjct: 359 ARGWGADYSNANEVYMRQDDNGAPLTGQNRWERDVEARYVVQTGSLKDLSLRVRQATTRA 418

Query: 397 SDGVYYDSPSIDELRLIVEYPLSIL 421
           +    ++S  +DE+R I EYPLSIL
Sbjct: 419 T---AFES-DLDEVRFIAEYPLSIL 439