Pairwise Alignments

Query, 354 a.a., DNA polymerase IV from Pseudomonas putida KT2440

Subject, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

 Score =  304 bits (778), Expect = 3e-87
 Identities = 166/352 (47%), Positives = 226/352 (64%), Gaps = 3/352 (0%)

Query: 3   LRKIIHVDCDCFYAAIEMRDDPRLAGRPMAVGGSPDHRGVIATCNYEARAYGVRSAMSSR 62
           +RKIIHVD DCF+AA+EMRD+P      +AVGG    RGVI+TCNY+AR +GVRSAM + 
Sbjct: 5   IRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTA 64

Query: 63  HALKLCPDLLIVKPRFEAYREASREIHTIFRDYTELIEPLSLDEAYLDVSDSQWYSGSAT 122
            ALKLCP L +V  R   Y+  S++I TIF+ YT LIEPLSLDEAYLDVS+S  Y GSAT
Sbjct: 65  QALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSAT 124

Query: 123 RIAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVITPNEVETFVAALPVAR 182
            IA+ IRR + + L++T SAGVAP KFLAK+ASD  KP+GL+V+TP++V+  V +LP+ +
Sbjct: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184

Query: 183 LHGVGKVTADKLTRLGIETCLHLREWSRLALVREFGSFGERLWGLARGIDERAVHNDSRR 242
           + GVGKV  +KL + G+     +R      L+ +FG  G  LW  + GIDER V  +  R
Sbjct: 185 IPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERER 244

Query: 243 QSVSVENTYDTDLPDLASCLARLPE-LLDSLNERIARMDSSYRPDKPFVKVKFHDFSQTT 301
           +SV VE T+  ++     C   + + L   L+ R++R        K  +KVKF DF QTT
Sbjct: 245 KSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTT 304

Query: 302 MEQAGAGRDLESYRQLLGQAFAR-GGKPVRLLGVGVRLRDLRGAHEQLELFP 352
           +E      +L+ + +LL Q   R  G+ +RLLG+ V L+      +QL +FP
Sbjct: 305 IEHVHPALELDYFHELLEQVLTRQQGREIRLLGLSVMLKP-ELQMKQLSMFP 355