Pairwise Alignments

Query, 354 a.a., DNA polymerase IV from Pseudomonas putida KT2440

Subject, 387 a.a., nucleotidyltransferase/DNA polymerase involved in DNA repair from Dechlorosoma suillum PS

 Score =  152 bits (383), Expect = 2e-41
 Identities = 116/363 (31%), Positives = 171/363 (47%), Gaps = 29/363 (7%)

Query: 4   RKIIHVDCDCFYAAIEMRDDPRLAGRPMAVGGSP------------------DH--RGVI 43
           R+I H+D D F+A++E+   P L GRP+ VGG                    D+  RGVI
Sbjct: 9   RRIAHLDMDAFFASVELLHYPELRGRPVVVGGRAVDRPRRQADGSLHFARLRDYVGRGVI 68

Query: 44  ATCNYEARAYGVRSAMSSRHALKLCPDLLIVKPRFEAYREASREIHTIFRDYTELIEPLS 103
            T  YEARA GV S M    A +L PD +++   F+AYR+ SR            IE   
Sbjct: 69  TTSTYEARALGVFSGMGLMKAAQLAPDAILLPANFDAYRDYSRRFKAAVAAIAPCIEDRG 128

Query: 104 LDEAYLDVSDSQWYSGSATRIAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGL 163
           +DE Y+D+S  +    +   +A  ++  V     +T S G+ PNK L+KI SD  KP+G+
Sbjct: 129 IDEIYIDLSHIE---EATLPLARRLKAAVLAATGLTCSIGITPNKLLSKICSDLDKPDGI 185

Query: 164 FVITPNEVETFVAALPVARLHGVGKVTADKLTRLGIETCLHLREWSRLALVREFG-SFGE 222
            V+   EV T +  L   +++G+G    ++L +LGI +   L       LV+ FG S G 
Sbjct: 186 TVLGMEEVPTRIWPLVAKKINGIGPKANERLGQLGIHSIGDLAAAPPEMLVQHFGRSTGA 245

Query: 223 RLWGLARGIDERAVHNDSRRQSVSVENTYDTDLPDLASCLARLPELLDSLNERIA--RMD 280
            L   A GIDER +      +S+S E+T+  DL       A L E+   +  R+A     
Sbjct: 246 WLHRAAHGIDERPLSTSREPKSISRESTFSRDL-HARHDRAELSEIFTGMCLRVADDLAR 304

Query: 281 SSYRPDKPFVKVKFHDFSQTT--MEQAGAGRDLESYRQLLGQAFARGGKPVRLLGVGVRL 338
             Y      +K+++ DF   T  +  A    D  + R+  G+   R     RL  +GVR 
Sbjct: 305 QGYVARTIGIKLRYADFQSVTRDLTLAVPTADGAAIRKAAGECLKRVPLQQRLRLLGVRA 364

Query: 339 RDL 341
             L
Sbjct: 365 SSL 367