Pairwise Alignments

Query, 354 a.a., DNA polymerase IV from Pseudomonas putida KT2440

Subject, 385 a.a., DNA-directed DNA polymerase from Burkholderia phytofirmans PsJN

 Score =  161 bits (407), Expect = 3e-44
 Identities = 112/376 (29%), Positives = 183/376 (48%), Gaps = 31/376 (8%)

Query: 4   RKIIHVDCDCFYAAIEMRDDPRLAGRPMAVGGSPDH--------------------RGVI 43
           R+I H+D D FYA++E+   P L G+P+ +GG  +                     RGV+
Sbjct: 6   RRIAHLDMDAFYASVELLRYPELRGKPVVIGGGRNATPKILADGTRRFARLRDYVGRGVV 65

Query: 44  ATCNYEARAYGVRSAMSSRHALKLCPDLLIVKPRFEAYREASREIHTIFRDYTELIEPLS 103
            T  YEARA+GV SAM    A +L PD +++   FE+YR  SR        +T+ +E   
Sbjct: 66  TTSTYEARAFGVFSAMGMMKAAQLAPDAILLPTDFESYRRYSRLFKDAVGAFTDQMEDRG 125

Query: 104 LDEAYLDVSDSQWYSGSATRIAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGL 163
           +DE Y+D++     +G +  + + I+  V +   +T S  +APNK LAKI S+  KP+GL
Sbjct: 126 IDEIYIDLTA---VTGESRELGDRIKAAVRQATSLTCSIAIAPNKLLAKIGSELDKPDGL 182

Query: 164 FVITPNEVETFVAALPVARLHGVGKVTADKLTRLGIETCLHLREWSRLALVREFG-SFGE 222
            V+T  ++E+ +  L   +++G+G    ++L  +GI T   L       L   FG ++ E
Sbjct: 183 TVLTMADLESRIWPLAAKKINGIGPRATERLAGIGIATVGELAAADPGLLQEHFGRTYAE 242

Query: 223 RLWGLARGIDERAVHNDSRRQSVSVENTYDTDL---PDLASCLARLPELLDSLNERIARM 279
               +ARGID+R +   S  +S+S E T++ D+    D  +    L  L + + + + R 
Sbjct: 243 WFARVARGIDDRPIVVASEPKSMSRETTFERDMHVNRDRVTLTPALTRLCERVADDLQR- 301

Query: 280 DSSYRPDKPFVKVKFHDFSQTTMEQA--GAGRDLESYRQLLGQAFARGGKPVRLLGVGVR 337
              Y      +K+KF DF   T + +   A  D  + R+  G+   R     R+  +GVR
Sbjct: 302 -KGYGGRTVGLKIKFADFRIVTRDLSLPEAVTDAAAIRRAAGECLKRVPLDRRIRLIGVR 360

Query: 338 LRDLRGAHEQLELFPP 353
           +  L    +      P
Sbjct: 361 IGSLERTSDSTSAVSP 376