Pairwise Alignments

Query, 236 a.a., S4 domain protein from Pseudomonas putida KT2440

Subject, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

 Score = 71.6 bits (174), Expect = 1e-17
 Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 15/235 (6%)

Query: 5   VRLSKRLIEQLGCSRREAEQYIEGGWVTVDGVVVEQPQFKVEQQRVELLPGARAETLEPV 64
           +RL K L + LG +R+EA Q ++ G VTVD VV +   FK+++       G       P 
Sbjct: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGPR 60

Query: 65  TLLLNQPAGM--DSEDARASMNMGSLSEAHREGVRALHGHFARQACVAPLERGASGLQVF 122
            +++++P G+    ED      +  L E + + +     HFA +     L+   +GL + 
Sbjct: 61  YIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDL-----HFAGR-----LDVDTTGLLLI 110

Query: 123 TQDWRVSRKIEADLRRLEQEFIIEVRGETTPQALERLARG-AMRNDRELP-KAKASWQNE 180
           T D + S ++ +   + E+ + + +         E+  RG  +R +REL   A+    +E
Sbjct: 111 TDDGQWSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQLEVISE 170

Query: 181 THLRMVLKNPQPGQISELCAYLRLELLGMRRIRLGGVSMGK-LPLGQWRYLATSE 234
           T + + +   +  Q+  + A L  +++G+ R R+G +++ + L  G++RYL   E
Sbjct: 171 TEVLLTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEE 225