Pairwise Alignments

Query, 412 a.a., porin-like protein from Pseudomonas putida KT2440

Subject, 424 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

 Score =  297 bits (760), Expect = 5e-85
 Identities = 171/419 (40%), Positives = 235/419 (56%), Gaps = 23/419 (5%)

Query: 11  LLGAGVIAGLPGTS--LAAGFVEDGKATLGLRNFYINRNFTNPSNPQSKAEEWTQSFILD 68
           LL A + A   G S   +A F+ED KA + LRNFY+NR+F      QSKAEEW Q FIL 
Sbjct: 10  LLAASIAAVALGASGVASAAFIEDSKAAVELRNFYMNRDFRQSGAAQSKAEEWAQGFILK 69

Query: 69  ARSGFTEGPIGFGVDVLGLWSVKLDGGGGTYGTALL--PRHDDGRPADDYGRLAVAGKAR 126
             SG+TEGP+GFG+D +GL  VKLD      GT +L   R+   R  DDYG   +  KA+
Sbjct: 70  MESGYTEGPVGFGLDAVGLLGVKLDSSPDRTGTGILQRDRNAPNRAQDDYGSAGLTAKAK 129

Query: 127 ISKTELKIGEWMPVLPILRSDDGRSLPQTFRGGQVTSNEIAGLTLYGGQFRGNSPRNDAS 186
           +S T L +G   PV+P+L  +D R LPQT+RG  + S E++GLTL  G     + R+ + 
Sbjct: 130 LSATTLHVGTLQPVVPVLMRNDSRLLPQTYRGAWLQSKEVSGLTLDLGMLDRVNQRDSSD 189

Query: 187 MEDMSY------------GGGVSDRFNFVGGEYKFNQDRTQVGLWNAVLKDVYQQQYLQL 234
            E+M+             GG  SD F F GG Y ++  +     +   L  +Y Q    L
Sbjct: 190 NEEMTVFNAGRRNITFGSGGSTSDEFLFAGGRYDWS-PQLATSYYYGGLDGIYDQHNFNL 248

Query: 235 SHSQPVGD-WTLGANLGYFHGDEDGSERAGQLDNKTYSGMFSAKYGGSTFWVGLQKVDGD 293
            H  P+GD  +   +L +    +DG      +DN  +  +F+ K GG  F  G Q + GD
Sbjct: 249 VHVLPLGDKQSFKTDLRFVRSTDDG---GSNVDNDAFGALFTYKLGGHGFTGGYQHMRGD 305

Query: 294 TWMRVNGTSGGTLANDSYNSSFDNANERSWQVRHDFNFVTVGVPGLTLMNRYISGRDVHS 353
           T           L N    + F N +ERSWQVR+D++F  +GVPGLTLM RY+SG +V  
Sbjct: 306 TGFAYVAGGDNALINLLQINDFGNEDERSWQVRYDYDFAAMGVPGLTLMTRYVSGDNVDR 365

Query: 354 G-GVTDGKEWVRETELAYVIQSGAFKDLSVKWRNSSIRRDYSNNEFDENRLIFNYPLSL 411
           G G ++GK W R T++AYVIQSG  K+L +K RN++ R ++  N+ DENR+I +Y L L
Sbjct: 366 GAGASEGKTWERNTDIAYVIQSGPLKNLGLKLRNATTRSNF-QNDLDENRVIVSYSLPL 423