Pairwise Alignments

Query, 948 a.a., RNA polymerase-associated protein RapA from Pseudomonas putida KT2440

Subject, 969 a.a., RNA polymerase-associated protein RapA from Vibrio cholerae E7946 ATCC 55056

 Score =  889 bits (2297), Expect = 0.0
 Identities = 479/963 (49%), Positives = 643/963 (66%), Gaps = 27/963 (2%)

Query: 8   GQRWISDSEAELGLGTILAQDGRLLTVLYPATGDTRQYSLRNAPLTRVRFSPGDQITHFE 67
           GQRWISD+E++LGLGT++A D R +T+++ A+ + R Y+  +AP+TRV F+ GD +   +
Sbjct: 6   GQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVIFNVGDVVDSQQ 65

Query: 68  GWKLTVREVEDIDGLMVYHG--LDGQNQPRTLPETQLSNFIQFRLASDRLFAGQIDPLSW 125
           GW L V +V +  G+  Y G  +D +     L E  LSN I+F    D+LFAGQID +  
Sbjct: 66  GWSLQVEQVVEDQGVYTYLGTRVDTEESGVALREIFLSNQIRFNKPQDKLFAGQIDRMDN 125

Query: 126 FSLRYNTLQHTSKQMQSALWGLGGCRAQPIAHQLHIAREVADRSAPRVLLADEVGLGKTI 185
           F LRY  L +  +Q +S + GL G RA  I HQL+IA EV  R APRVLLADEVGLGKTI
Sbjct: 126 FVLRYRALTNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTI 185

Query: 186 EAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFIE--SDASNP 243
           EAG++IH+Q+L+GRA R+LI+VPE LQHQWLVEM RRFNL  ++FD ER +E  S+A NP
Sbjct: 186 EAGMIIHQQVLTGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFSEADNP 245

Query: 244 FEDAQLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEDQVSAEYGLVEQLAQV 303
           FE  Q  L +L++L    +  +    A WDLLVVDEAHHL WH ++ S EY ++E LA+ 
Sbjct: 246 FETQQYVLCSLDFLRKSRQRFEQALEAEWDLLVVDEAHHLEWHPEKPSREYQVIEALAEQ 305

Query: 304 IPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESEHYRPVAEAVQELLDEGRL 363
            PGVLLLTATPEQLG++SHFARLRLLD +RF+D  AF  E E Y PVA+AV  L    +L
Sbjct: 306 TPGVLLLTATPEQLGRESHFARLRLLDADRFYDYEAFVKEEEQYAPVADAVTALFSGEKL 365

Query: 364 SPKAHATILGFLGAEG-EALLAAVSDGDTQ-----ASARLIRELLDRHGTGRVLFRNTRA 417
           S +A   I   L  +  E L  A+    ++     A   LI  L+DRHGTGRVLFRNTRA
Sbjct: 366 SDEAKNKITELLSEQDVEPLFKALESHASEDEIALARQELIDNLMDRHGTGRVLFRNTRA 425

Query: 418 AIQGFPERQLHPYPLPTPEQYRDL-------------PAGEHAELYPEVAFQA-QGEVAD 463
           AI+GFP R +H  PL  P QY                 A     LYPE  FQ  +GE   
Sbjct: 426 AIKGFPVRNVHLLPLEIPSQYTTSMRVAGMLGGKLTPEARAMKMLYPEEIFQEFEGE--- 482

Query: 464 DERWWRFDPRVDWLIDTLKMLKRTKVLVICAHAETAMDLEDALRVRSGIPASVFHEGMSI 523
           +  WW+FD RV+WL++ +K  +  K+LVI + A TA+ LE ALR R GI A+VFHEGMSI
Sbjct: 483 ESSWWQFDSRVNWLLEKVKAKRSEKILVIASRASTALQLEQALREREGIRATVFHEGMSI 542

Query: 524 LERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFAHHLVMFDLPAHPDLLEQRIGRLDRI 583
           +ERD+AAAYFA EE GAQVLICSEIGSEGRNFQFA+ LVMFDLP +PDLLEQRIGRLDRI
Sbjct: 543 IERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRI 602

Query: 584 GQKHTIQLHIPYLQDSPQERLFQWYHEGLNAFLNTCPTGNALQHQFGPRLLPLLEGGENK 643
           GQK  I +++PYL ++ Q  L +W+ EGLNAF  TCPTG A+   F  RL+P+L  G  +
Sbjct: 603 GQKRDIDVYVPYLTETSQAILARWFQEGLNAFAETCPTGRAVYDAFAERLIPILAAGGGE 662

Query: 644 AWDTLVADARSERERLEAELHTGRDRLLELNSGGAGEGQALVEAILEQDDQFALPIYMET 703
             + ++ ++    + L+++L  GRDRLLE++S G  + Q + E I + D    L  +  +
Sbjct: 663 ELEVIIEESAKLNKTLKSQLEVGRDRLLEMHSNGGEKAQQIAEQIAKTDGDTNLVTFALS 722

Query: 704 LFDAFGIDSEDHSENALILKPSEKMLDASFPLGDDEGVTITYDRGQALSREDMQFLTWEH 763
           LFDA G+  ED  ENAL++ P+E M+  S+P    EG TIT+DR  ALSREDM F++WEH
Sbjct: 723 LFDAIGLHQEDRGENALVVTPAEHMMVPSYPGLPYEGATITFDRDTALSREDMHFISWEH 782

Query: 764 PMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELLFVSEVVAPRSLQLGRYLPPAAL 823
           PMVQGG+DL++S  +G  AV+L+KNKAL  GT+LLEL++V +  AP+   + R+LP + +
Sbjct: 783 PMVQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELVYVVDAQAPKRSGISRFLPVSPI 842

Query: 824 RCLLDANGNDLASRVAFETLNDQLESVPRASANKFVQAQRDVLAKRISGGEEKILPAHNE 883
           R L+DA GNDL+S+V FE+ N QL  V R  A+K V + +  + + I+  E  + P  + 
Sbjct: 843 RILMDARGNDLSSQVEFESFNRQLSPVNRHLASKLVSSVQHDVHRLITASETAVEPRVSA 902

Query: 884 RVAEAQRRLAAEADEELARLVALQAVNPSVRDSEIDALRKRREDGLAMLEKAALRLEAIR 943
              +AQR +    + EL RL+AL+AVNP++RD EI+ L ++ ++    + +A  +L+++R
Sbjct: 903 IREQAQRDMQQSLNSELERLLALKAVNPNIRDEEIEVLDQQIKELTGYIAQAQYQLDSLR 962

Query: 944 VLV 946
           ++V
Sbjct: 963 LIV 965