Pairwise Alignments

Query, 948 a.a., RNA polymerase-associated protein RapA from Pseudomonas putida KT2440

Subject, 1170 a.a., helicase from Sinorhizobium meliloti 1021

 Score =  134 bits (337), Expect = 3e-35
 Identities = 138/513 (26%), Positives = 213/513 (41%), Gaps = 84/513 (16%)

Query: 153 QPIAHQLHIARE-VADRSAPRVLLADEVGLGKTIEAGLVIHRQLLSGRASRVLILVPENL 211
           +P+ HQ+    E +  R   R +LAD+ G GKTI AGL I   ++   + R+LI+ P +L
Sbjct: 103 EPLPHQITAVYESLLPRQPLRFVLADDPGAGKTIMAGLYIRELIMRADSHRILIVAPGSL 162

Query: 212 QHQWLVEMRRRFNLQVALFDAERFIESDASNPFEDAQLALVALEWLVDDEKAQDALFAAG 271
             QW  E+  +F L+  ++ +     S + NPFED    +V L+ +  +E+ QD L A G
Sbjct: 163 VEQWRDELHEKFGLEFYVYSSLLEQTSPSGNPFEDYPRLIVRLDQISRNEELQDKLCAPG 222

Query: 272 WDLLVVDEAHHLVWH----EDQVSAEYGLVEQLAQVIPGVLLLTATPEQLGQDSHFARLR 327
           WDL V DEAH L  H    + + +  +   E+L   +  +LL+TATP    ++     L 
Sbjct: 223 WDLAVFDEAHKLSAHYFGSKLEKTGRFRFAEKLGAHVRHLLLMTATPHNGKEEDFQLFLS 282

Query: 328 LLDPNRFH----------------------DLAAFRA-------------------ESEH 346
           LLD +RF+                      +L  F                     E+  
Sbjct: 283 LLDSDRFYGKFRDGVHKVDASDLMRRMVKEELVKFDGTPLFPERKAYTVNYELSPIEAAL 342

Query: 347 YRPVAEAVQELLDEGRLSPKAHATILGFLGAEGEALLAAVSDGDTQASARLIRELLDRHG 406
           Y  V   VQ  + +      A    +GF     +  LA+  +   Q+  R    L +R  
Sbjct: 343 YEAVTNYVQTEMGKADQLEGARKGSVGFALTALQRRLASSPEAIFQSLKRRRERLENR-- 400

Query: 407 TGRVLFRNTRAAIQGFPERQLHPYPLPTPEQYRDLPAGEH-----------------AEL 449
                 R+ +  I+G     L       PE   +L A E                  AEL
Sbjct: 401 -----LRDEKLGIKG--RNALAETYATAPEDEDELSAEEQESLEENLIDDATAAKTVAEL 453

Query: 450 YPEVAF------QAQGEVA--DDERWWRFDPRVDWLIDTLKMLKRTKVLVICA-HAETAM 500
             E+        QA+  VA   D +W      +    +      R + ++I + H +T  
Sbjct: 454 EAEIVILKGLEAQAKSVVASGQDRKWDELSRILQNNPEMRDASGRQRKIIIFSEHRDTLN 513

Query: 501 DLEDALRVRSGIPASV--FHEGMSILERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFA 558
            L+  +    G P ++   H G    ER R  A F   +   +VL+ ++   EG N Q A
Sbjct: 514 YLQARIAGVLGNPDAIVTIHGGTHRDERRRLQALFR-SDLDVRVLVATDAAGEGVNLQNA 572

Query: 559 HHLVMFDLPAHPDLLEQRIGRLDRIGQKHTIQL 591
           + +V +DLP +P+ LEQR GR+ RIGQ     L
Sbjct: 573 NLMVNYDLPWNPNRLEQRFGRIHRIGQTEVCHL 605