Pairwise Alignments

Query, 948 a.a., RNA polymerase-associated protein RapA from Pseudomonas putida KT2440

Subject, 968 a.a., RNA polymerase-associated protein HepA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  910 bits (2352), Expect = 0.0
 Identities = 487/963 (50%), Positives = 658/963 (68%), Gaps = 28/963 (2%)

Query: 8   GQRWISDSEAELGLGTILAQDGRLLTVLYPATGDTRQYSLRNAPLTRVRFSPGDQITHFE 67
           GQRWISD+E+ELGLGT++  +GR++TVL+PATG+ R +S   APLTRV ++PGD +   E
Sbjct: 6   GQRWISDTESELGLGTVVQVEGRMVTVLFPATGENRMFSRNEAPLTRVIYNPGDTVESHE 65

Query: 68  GWKLTVREVEDIDGLMVYHGLDGQNQPR-TLPETQLSNFIQFRLASDRLFAGQIDPLSWF 126
           GW L+V E+ + D L+VYHG+  +   + +L ET L++ I+F    DRLFAGQID L  F
Sbjct: 66  GWSLSVEELTEKDDLVVYHGIHSETGEKVSLRETLLNHNIRFNKPQDRLFAGQIDRLDRF 125

Query: 127 SLRYNTLQHTSKQMQSALWGLGGCRAQPIAHQLHIAREVADRSAPRVLLADEVGLGKTIE 186
            +RY       +   S L GL G R   I HQ+ IA EV  R APRVLLADEVGLGKTIE
Sbjct: 126 GIRYQCQLLRHQLATSDLLGLQGPRVGLIPHQMWIAHEVGRRYAPRVLLADEVGLGKTIE 185

Query: 187 AGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFIES--DASNPF 244
           AGL+IH+QLL+ RA RVLI+VP+ L+HQWLVEM RRFNL+ ++FD +R +E+  D  NPF
Sbjct: 186 AGLIIHQQLLTCRAERVLIIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAFADHDNPF 245

Query: 245 EDAQLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEDQVSAEYGLVEQLAQVI 304
              QL + +LE L+  +K  D    A WDLLVVDEAHHL W E+  S  Y +VE L++V+
Sbjct: 246 YTEQLVICSLE-LLRKKKRLDQALDADWDLLVVDEAHHLEWTEEAPSRAYQVVEALSEVV 304

Query: 305 PGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESEHYRPVAEAVQELLDEGRLS 364
           PGVLLLTATP+QLG +SHFARLRLLDP+RF+D  AF AE   Y+ VA A + L  E +LS
Sbjct: 305 PGVLLLTATPDQLGHESHFARLRLLDPDRFYDYDAFLAEENSYKDVAIAAEALAGESKLS 364

Query: 365 PKAHATILGFLGAEGEA-----LLAAVSDGDTQASAR--LIRELLDRHGTGRVLFRNTRA 417
             A  ++   L  +  A     + A   D + Q +AR  L++ELLDRHGTGRVL+RN+RA
Sbjct: 365 DYAINSLTELLSEKDIAPSIRLIQAEGIDSELQQAARSELLQELLDRHGTGRVLYRNSRA 424

Query: 418 AIQGFPERQLHPYPLPTPEQY-------------RDLPAGEHAELYPEVAFQAQGEVADD 464
           +++GFP+R  + YP   PEQY             + L A     L PE  +Q   E  D+
Sbjct: 425 SVKGFPKRIFNAYPHAMPEQYLTAARVNDMMGGRKSLEAKAAQALSPEKLYQ---EFEDN 481

Query: 465 ER-WWRFDPRVDWLIDTLKMLKRTKVLVICAHAETAMDLEDALRVRSGIPASVFHEGMSI 523
              WW+FDPRVDWLI+ LK  +  KVL+I + A+TA+ LE+ALR R GI A+VFHEGMSI
Sbjct: 482 SASWWKFDPRVDWLIEFLKSHRSKKVLIIASGADTALSLEEALRTREGIQATVFHEGMSI 541

Query: 524 LERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFAHHLVMFDLPAHPDLLEQRIGRLDRI 583
           +ERD+A AYFA EE GAQ LICSEIGSEGRNFQFA HLV+FDLP +PDLLEQRIGRLDRI
Sbjct: 542 IERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDRI 601

Query: 584 GQKHTIQLHIPYLQDSPQERLFQWYHEGLNAFLNTCPTGNALQHQFGPRLLPLLEGGENK 643
           GQK+ IQ+H+PYLQD+ QERL QWYH+GLNAF  TCP G+ L  +F   LL +L GG+  
Sbjct: 602 GQKNDIQIHLPYLQDTAQERLLQWYHQGLNAFELTCPGGHILFSEFAEELLNVLVGGDED 661

Query: 644 AWDTLVADARSERERLEAELHTGRDRLLELNSGGAGEGQALVEAILEQDDQFALPIYMET 703
               L+   +S  + L+  +  GRD+LLE+NS G  + +A+VE + + D    L   +  
Sbjct: 662 ELTNLLNHTQSRYKELKHAMEQGRDKLLEINSHGGDKAKAIVERLAQSDQDTKLIGSVIR 721

Query: 704 LFDAFGIDSEDHSENALILKPSEKMLDASFPLGDDEGVTITYDRGQALSREDMQFLTWEH 763
           L+D  G+D ED  EN++IL+PSE M+  ++P   ++GVT+T+DR  ALSR+D+  +T EH
Sbjct: 722 LWDIIGVDQEDKGENSIILRPSEHMMFPTYPGLHEDGVTVTFDRDTALSRDDIALITQEH 781

Query: 764 PMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELLFVSEVVAPRSLQLGRYLPPAAL 823
           P+VQ G+DL+     G T+VA++KNKAL  GT+ LEL+++++  AP+S QL RYLPP  +
Sbjct: 782 PLVQTGLDLITGSDTGTTSVAILKNKALPAGTLFLELIYMADASAPKSSQLYRYLPPTPI 841

Query: 824 RCLLDANGNDLASRVAFETLNDQLESVPRASANKFVQAQRDVLAKRISGGEEKILPAHNE 883
           R LLD NGNDL+++V + + + QL +V R   +K V A + +L    + GEE    A NE
Sbjct: 842 RILLDKNGNDLSAKVDYTSFDKQLSAVNRHIGSKLVTASQPILHPLFAKGEEYAQVAVNE 901

Query: 884 RVAEAQRRLAAEADEELARLVALQAVNPSVRDSEIDALRKRREDGLAMLEKAALRLEAIR 943
            VA+A+ ++ ++   EL RL +L+AVNP++R+ E++ LR + ++    L+ + L+L+AIR
Sbjct: 902 LVAQAREKMTSQLTGELERLESLKAVNPNIREEELEYLRNQMQELTTYLDASQLQLDAIR 961

Query: 944 VLV 946
           +++
Sbjct: 962 MVL 964