Pairwise Alignments

Query, 948 a.a., RNA polymerase-associated protein RapA from Pseudomonas putida KT2440

Subject, 968 a.a., RNA polymerase-associated protein RapA from Klebsiella michiganensis M5al

 Score =  931 bits (2407), Expect = 0.0
 Identities = 501/961 (52%), Positives = 656/961 (68%), Gaps = 24/961 (2%)

Query: 8   GQRWISDSEAELGLGTILAQDGRLLTVLYPATGDTRQYSLRNAPLTRVRFSPGDQITHFE 67
           GQRWISD+E+ELGLGT++A D R++T+L+PA G+ R Y+  ++P+TRV F+PGD IT  E
Sbjct: 6   GQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYARNDSPITRVMFNPGDTITSHE 65

Query: 68  GWKLTVREVEDIDGLMVYHG--LDGQNQPRTLPETQLSNFIQFRLASDRLFAGQIDPLSW 125
           GW+L V EV + +GL+ Y G  LD Q    TL E  L + + F    DRLFAGQID +  
Sbjct: 66  GWQLQVDEVNEENGLLAYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDR 125

Query: 126 FSLRYNTLQHTSKQMQSALWGLGGCRAQPIAHQLHIAREVADRSAPRVLLADEVGLGKTI 185
           F+LRY   +  S+Q +    GL G R   I HQL+IA +V  R APRVLLADEVGLGKTI
Sbjct: 126 FALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTI 185

Query: 186 EAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFIES--DASNP 243
           EAG+++H+QLLSG A RVLI+VPE LQHQWLVEM RRFNL+ +LFD ER+ E+  DA NP
Sbjct: 186 EAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAINP 245

Query: 244 FEDAQLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEDQVSAEYGLVEQLAQV 303
           FE  QL + +L+++   ++  + L  A WDL+VVDEAHHLVW ED  S EY  +EQLA+ 
Sbjct: 246 FETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEDAPSREYQAIEQLAER 305

Query: 304 IPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESEHYRPVAEAVQELLDEGRL 363
           +PG+LLLTATPEQLG +SHFARLRLLDPNRFHD A F  E ++YRPVA+AV  LL   +L
Sbjct: 306 VPGILLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQQNYRPVADAVALLLAGNKL 365

Query: 364 SPKAHATILGFLGAEG-EALL-AAVSDGDTQASAR--LIRELLDRHGTGRVLFRNTRAAI 419
           +      +   +G +  E LL AA SD D   +AR  L+  L+DRHGT RVLFRNTR  +
Sbjct: 366 NDAELNALSDLIGEQDIEPLLQAANSDRDDAQAARQELVSMLMDRHGTSRVLFRNTRNGV 425

Query: 420 QGFPERQLHPYPLPTPEQYRD-------LPAGEHAE------LYPEVAFQAQGEVADDER 466
           +GFP+R+LH   LP P QY+        + A + AE      LYPE  +Q      D   
Sbjct: 426 KGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFE--GDTGT 483

Query: 467 WWRFDPRVDWLIDTLKMLKRTKVLVICAHAETAMDLEDALRVRSGIPASVFHEGMSILER 526
           WW FDPRV+WL+  L   +  KVLVICA A TA+ LE  LR R GI A+VFHEGMSI+ER
Sbjct: 484 WWNFDPRVEWLMGHLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIER 543

Query: 527 DRAAAYFADEEFGAQVLICSEIGSEGRNFQFAHHLVMFDLPAHPDLLEQRIGRLDRIGQK 586
           DRAAA+FA+E+ GAQVL+CSEIGSEGRNFQFA +LVMFDLP +PDLLEQRIGRLDRIGQ 
Sbjct: 544 DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQA 603

Query: 587 HTIQLHIPYLQDSPQERLFQWYHEGLNAFLNTCPTGNALQHQFGPRLLPLLEGGENK-AW 645
           H IQ+H+PYL+ + Q  L +WYHEGL+AF +TCPTG  +       L+  L   EN   +
Sbjct: 604 HDIQIHVPYLERTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHNELINYLAAPENTDGF 663

Query: 646 DTLVADARSERERLEAELHTGRDRLLELNSGGAGEGQALVEAILEQDDQFALPIYMETLF 705
           D L+   R + + L+A+L  GRDRLLE++S G  + Q L E+I EQDD  +L  +   LF
Sbjct: 664 DELIKACRQQHDALKAQLEQGRDRLLEIHSNGGEKAQQLAESIEEQDDDTSLIAFSMNLF 723

Query: 706 DAFGIDSEDHSENALILKPSEKMLDASFPLGDDEGVTITYDRGQALSREDMQFLTWEHPM 765
           D  GI+ +D  EN ++L PS+ ML   FP   ++G TIT++R  ALSRED QF+TWEHP+
Sbjct: 724 DIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPL 783

Query: 766 VQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELLFVSEVVAPRSLQLGRYLPPAALRC 825
           +  G+DL+LSG  G++ ++L+KNKAL  GT+LLEL++V E  AP+ LQL R+LPP  +R 
Sbjct: 784 IINGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKHLQLNRFLPPTPVRM 843

Query: 826 LLDANGNDLASRVAFETLNDQLESVPRASANKFVQAQRDVLAKRISGGEEKILPAHNERV 885
           LLD NGN+LA +V FE+ N QL +V R + +K V A +  +   +  GE ++  A    +
Sbjct: 844 LLDKNGNNLAGQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEGQVAKAAQALI 903

Query: 886 AEAQRRLAAEADEELARLVALQAVNPSVRDSEIDALRKRREDGLAMLEKAALRLEAIRVL 945
             A++    +   EL+RL AL+AVNP++RD E+ A+   R+  +  L +A  RL+A+R++
Sbjct: 904 DAARKEADDKLTAELSRLEALRAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLI 963

Query: 946 V 946
           V
Sbjct: 964 V 964