Pairwise Alignments

Query, 754 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

Subject, 642 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  340 bits (871), Expect = 2e-97
 Identities = 184/431 (42%), Positives = 268/431 (62%), Gaps = 3/431 (0%)

Query: 276 LSQLDQARASLQQAAHYDALTNLLNRRGFNQVFAERLVEHQASENRLAVMFLDIDHFKRI 335
           LS L ++R  L Q AHYD L NL NR  F +   + L   +A +   A++ +D+DHFK I
Sbjct: 191 LSALKRSREELDQLAHYDPLVNLPNRLLFTERAKQDLERARAHKRSGALLLIDLDHFKDI 250

Query: 336 NDSLGHDAGDELLKVIANHIKAATRNHDLVARFGGDEFCVVTSLNSRDEARHLAQRIMQR 395
           N+SLGH  GD LL+ ++  +         + R GGDEF ++      ++A  LA RI+ R
Sbjct: 251 NESLGHSLGDALLQAVSTRLSEHLEKGMTLGRLGGDEFALLCEGYGAEKATALALRILDR 310

Query: 396 MKDPIDLGGRRMVMTTSIGISIFP--DDGSTAEELLKHADLALYQSKDNGRNSLNFFNDS 453
           + +   +G + +  + SIGI ++P   D   AE+L+++AD AL+++K +GR++  F+++ 
Sbjct: 311 LNESFHIGDQELFSSASIGIVLYPYPTDVQNAEQLMRNADSALFKAKSSGRSTYAFYSEE 370

Query: 454 LKARASIALQLEEELRLALLEERGLCVHYQPIFDLRSGQVAKLEALVRWQHPQHGLLGPD 513
           L ++A   ++L   LR AL E+  L +HYQPI+DLR G ++  EALVRWQHP+ GL+ P 
Sbjct: 371 LTSQARQRVELVTALRQAL-EQGQLRLHYQPIYDLRQGTISGFEALVRWQHPEKGLIAPG 429

Query: 514 RFVGIAEANGLIIDLDLWVLRHACADLAHLQRHGYGEVQVTVNCSAVTLSHDELPNEVEK 573
            F+ IAE  GLI  +D WVL  AC         G+    + VN S+    + EL  +V  
Sbjct: 430 VFIPIAEETGLISAIDHWVLEQACNQAREWLGQGHPLGFIAVNISSRLFGNGELDLQVAT 489

Query: 574 ALFHAGLAPRHLELEVTENALVGDIQRTVSLLKRVRALGVALSIDDFGTGYSSLAYLKRL 633
            L  +GL  RHLELE+TE+A++ D    + LL+R+RALGV L+IDDFGTGYSSL  LKR+
Sbjct: 490 ILARSGLEARHLELEITESAVMQDPDAALELLQRLRALGVQLAIDDFGTGYSSLQRLKRM 549

Query: 634 PLDVLKIDRTFLQDVPGSQKDREIVQAIIAMAHTLHLRVVSEGVETAEQQAFLESHGCDY 693
            +  LKID+ F++ +P  + D  I +++I +AH L L+VV+EG+ETAEQ AFL +  CDY
Sbjct: 550 NVHKLKIDQGFVRGLPDDRDDAAITRSVIGLAHNLGLKVVAEGIETAEQAAFLLAQNCDY 609

Query: 694 LQGYLLGRPVP 704
            QGY   RP P
Sbjct: 610 GQGYGFARPQP 620