Pairwise Alignments

Query, 816 a.a., ATP-dependent helicase, DEAD box family from Pseudomonas putida KT2440

Subject, 1487 a.a., DEAD/DEAH box helicase from Rhodanobacter denitrificans MT42

 Score =  119 bits (298), Expect = 1e-30
 Identities = 110/394 (27%), Positives = 172/394 (43%), Gaps = 34/394 (8%)

Query: 242 DQVCHEIDASASSLVFTNTRAQAEIWYQALLEARPDWAGLIALHHASLARDTRDWVERSL 301
           D++   + A  ++LVF NTR  AE   + L E        +A HH SLA++ R   E+ L
Sbjct: 318 DRLAQLVRAHRTTLVFVNTRRMAERAARHLSERLGKEH--VAAHHGSLAKELRLDAEQRL 375

Query: 302 KQGSLKAVICTSSLDLGVDFLPVERVLQIGSAKGIARLMQRAGRSGHAPGRRSRVTLVPT 361
           K+G LK ++ T+SL+LG+D   V+ V Q+GS + IA  +QRAGRSGH+     +  L P 
Sbjct: 376 KRGELKVLVATASLELGIDIGEVDLVCQLGSPRSIAAFLQRAGRSGHSIDGTPKARLFPA 435

Query: 362 HSLELVEAAAARQALLAGHIEARFSPRLCMDVLVQHLVSMALGSGFRPEQLLAEVRSTWA 421
              +L+E  A    +  G ++A   P   +DVL Q +V+    + +  + L A VR  + 
Sbjct: 436 TRDDLIECTALLDCVRRGELDALVMPPQPLDVLAQQIVAEVACAEWDEDALYALVRRAYP 495

Query: 422 FRQLRDSQWQWALDFVCHGGSS----LTAYPDYQRVERQADGVYRVTSERLARRHRM-GI 476
           +R+L  + +   +  +  G ++      AY     V RQ      +   R AR   +   
Sbjct: 496 YRELARADFDAVVRMLAEGFTTRQGPRAAYIHRDAVNRQ------LRPRRSARLTALTSG 549

Query: 477 GTIVSDANLQLKYWSKGGGGKTLGSVEEAFIARLRPGDTLVFAGRVLELVRVENMTAYVR 536
           GTI   A+ ++    +      +G+V E F      GD          + RVE     V 
Sbjct: 550 GTIPDTADYKVVLEPQ---AIIVGTVNEDFAVESMAGDIFQLGNASYRIQRVERDRLRVE 606

Query: 537 RSTARKAAVARWNGGRMPLSSELA-------DALVEQLDAAA--------HERF---EGP 578
            +     ++  W G     S EL+       + L  QLDA          H++    E  
Sbjct: 607 DAHGAPPSIPFWLGEAPGRSDELSFGVSRLREELSAQLDAGGVSGALAWLHDQLGLSEAA 666

Query: 579 EMRAVRPLLALQAQWSALPTTSTLLAETFKSRQG 612
             + V  L   +A    LP+  TL+ E F    G
Sbjct: 667 AQQLVDYLARAKAALGVLPSQHTLVLERFFDESG 700



 Score =  104 bits (259), Expect = 4e-26
 Identities = 78/210 (37%), Positives = 109/210 (51%), Gaps = 14/210 (6%)

Query: 10  AWFAKRGWKPFAFQRRVWAAVERGESGLLHASTGAGKTYAVWLAALRAFKPR--PQGRHL 67
           AWF      P A Q   W ++  G   L+ A TG+GKT   +LAA+          G  L
Sbjct: 14  AWFRGAFAAPTAAQAAAWPSIRAGRHTLVAAPTGSGKTLTAFLAAIDELVREGVAHGGTL 73

Query: 68  APIQ-VLWVTPMRALAADTARALQAPLD-------ELQLP---WSVGVRSGDTNSAERAR 116
           A    VL+V+P++AL+ D    L+APL+       +L LP       VR+GDT   ER  
Sbjct: 74  ADATTVLYVSPLKALSNDIYVNLEAPLEGIRAELEKLGLPDVAIRTAVRTGDTPQVERNL 133

Query: 117 QARRLPSVLITTPESLTLLLTRAKAREDFATLQLVVVDEWHELLGNKRGVQLQLALARLR 176
             ++ P +L+TTPESL +LL  A  R   A+++ V+VDE H + G+KRG  L L+L RL+
Sbjct: 134 LRKQPPHILVTTPESLYVLLGSASGRSMLASVRTVIVDEIHAIAGSKRGSHLALSLERLQ 193

Query: 177 H-WHPGLPTWGLSATLGNLQHARDVLLPQG 205
                 L   GLSAT   ++   D L+  G
Sbjct: 194 SLCQRRLLRIGLSATQKPIEKVADFLVGAG 223