Pairwise Alignments

Query, 816 a.a., ATP-dependent helicase, DEAD box family from Pseudomonas putida KT2440

Subject, 826 a.a., ligase-associated DNA damage response DEXH box helicase from Pseudomonas fluorescens SBW25-INTG

 Score = 1149 bits (2972), Expect = 0.0
 Identities = 579/824 (70%), Positives = 673/824 (81%), Gaps = 8/824 (0%)

Query: 1   MPAATDLANAWFAKRGWKPFAFQRRVWAAVERGESGLLHASTGAGKTYAVWLAALRAF-- 58
           M    D A  WFA +GWKPFAFQ+ VWAAV+ G SGLLHASTGAGKTYA+W AAL  F  
Sbjct: 1   MAKPIDFAKQWFAAKGWKPFAFQKDVWAAVKDGRSGLLHASTGAGKTYALWFAALNRFAL 60

Query: 59  -KPRPQGRH---LAPIQVLWVTPMRALAADTARALQAPLDELQLPWSVGVRSGDTNSAER 114
            +P   G+      P+ VLW+TPMRALAADTARAL+APL+ LQ+PWS+G+R+GDT+S+ER
Sbjct: 61  TRPPVTGKRKPPAEPLTVLWITPMRALAADTARALEAPLEALQIPWSIGLRTGDTSSSER 120

Query: 115 ARQARRLPSVLITTPESLTLLLTRAKAREDFATLQLVVVDEWHELLGNKRGVQLQLALAR 174
           ARQ RR P+ L+TTPESLTL+L RA +    A L++VVVDEWHEL+GNKRGVQLQLALAR
Sbjct: 121 ARQTRRQPTALVTTPESLTLMLARADSEASLAHLRMVVVDEWHELIGNKRGVQLQLALAR 180

Query: 175 LRHWHPGLPTWGLSATLGNLQHARDVLLPQGG-LLVQGRQDKALQVDTLLPKAIERFPWA 233
           LR WHP L  WG+SATLGN  HA +VL+PQGG + VQG+  K L+VDTLLP   ERFPWA
Sbjct: 181 LRRWHPELMVWGISATLGNQPHALEVLVPQGGGINVQGQTVKRLEVDTLLPPVAERFPWA 240

Query: 234 GHMGLKMLDQVCHEIDASASSLVFTNTRAQAEIWYQALLEARPDWAGLIALHHASLARDT 293
           GH+GLKML QV  E+DAS S LVFTNTRAQ+EIWYQALL+ARPDWAG+IALHH SL+R+T
Sbjct: 241 GHIGLKMLPQVVAEVDASRSCLVFTNTRAQSEIWYQALLDARPDWAGVIALHHGSLSRET 300

Query: 294 RDWVERSLKQGSLKAVICTSSLDLGVDFLPVERVLQIGSAKGIARLMQRAGRSGHAPGRR 353
           RDWVER+LK G LKAV+CTSSLDLGVDFLPVERVLQIGSAKG+ARLMQRAGRSGHAPGR 
Sbjct: 301 RDWVERALKDGQLKAVVCTSSLDLGVDFLPVERVLQIGSAKGVARLMQRAGRSGHAPGRP 360

Query: 354 SRVTLVPTHSLELVEAAAARQALLAGHIEARFSPRLCMDVLVQHLVSMALGSGFRPEQLL 413
           SRVTLVPTHSLELVEAAAA+ A+    IEAR SP   +DVLVQHLVSMALG GF P+ LL
Sbjct: 361 SRVTLVPTHSLELVEAAAAQDAIAQRRIEARESPHKPLDVLVQHLVSMALGGGFTPDALL 420

Query: 414 AEVRSTWAFRQLRDSQWQWALDFVCHGGSSLTAYPDYQRVERQADGVYRVTSERLARRHR 473
            EVR  WA+R+L D+ W WAL FV HGG SLTAYPDY+RVE    G++RV   RLARRHR
Sbjct: 421 TEVRGAWAYRELTDADWAWALGFVRHGGLSLTAYPDYRRVEPDEHGIWRVPDARLARRHR 480

Query: 474 MGIGTIVSDANLQLKYWSKGGGGKTLGSVEEAFIARLRPGDTLVFAGRVLELVRVENMTA 533
           M +GTIVSDA++ LKYWSKGGGGK LGSVEE FIARL+PGD  +FAGR+LELVRVENMTA
Sbjct: 481 MSVGTIVSDASIHLKYWSKGGGGKNLGSVEEGFIARLKPGDGFLFAGRLLELVRVENMTA 540

Query: 534 YVRRSTARKAAVARWNGGRMPLSSELADALVEQLDAAAHERFEGPEMRAVRPLLALQAQW 593
           YVRRSTA+KAAV RWNGGRMPLS+ELA A+VE+ DAAAH  ++GPEM+AV+PLL  Q +W
Sbjct: 541 YVRRSTAKKAAVPRWNGGRMPLSNELAQAVVERFDAAAHGHYDGPEMQAVQPLLQTQLRW 600

Query: 594 SALPTTSTLLAETFKSRQGWHLFLYPFAGRMANLGLANLIAWRVSRAQPLSVSIAVNDYG 653
           S LPT   LLAE  KSR+GWHLFLYPFAGR  +LGLA+L+AWRVS+ QP++ SIAVNDYG
Sbjct: 601 SGLPTRKHLLAEALKSREGWHLFLYPFAGRQVHLGLASLLAWRVSQRQPVTFSIAVNDYG 660

Query: 654 FELLSPAQVDWASHL-PQALGTADLLEDVLASLNAGEMALRRFREIAQIAGLVFGGYPAA 712
            ELLS  +V+W   L P  LG   LL DV ASLNAGE+ALRRFREIA+IAGLVF GYP A
Sbjct: 661 LELLSATEVEWPELLDPTLLGPEHLLHDVSASLNAGELALRRFREIARIAGLVFAGYPGA 720

Query: 713 QKSTRQIQASSGLFYEVFRKHDAGNLLLGQARDEVLSEELEIERLHRQLLKMSELQLDLQ 772
            KSTRQ+QASSGLF+EVF+++D  NLLL QA +EVL +EL+I RL   LL M+ LQLD+ 
Sbjct: 721 PKSTRQVQASSGLFFEVFKQYDPQNLLLTQAGEEVLRDELDIRRLEETLLHMAALQLDVH 780

Query: 773 ALRRPGPLAFALLVEGMRETLSTEKLADRIARMVAELEQAANAG 816
            + RP PLAF LLVE MRE++S+EKL++RIARMV +LE+ A+ G
Sbjct: 781 VIERPTPLAFPLLVERMRESMSSEKLSERIARMVKDLEKIADNG 824