Pairwise Alignments

Query, 323 a.a., putative electron transport complex protein from Pseudomonas putida KT2440

Subject, 410 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  109 bits (272), Expect = 1e-28
 Identities = 88/301 (29%), Positives = 134/301 (44%), Gaps = 27/301 (8%)

Query: 27  LWLHGWGMMLNLLLCAS-AALLCEALLLALRSQSLSQALNDGSALVTAVLLAAALPTLAP 85
           L+L+G    L + L A    L  E +   +R Q L +        VTA+L    LP   P
Sbjct: 115 LFLYGLSFYLPIYLTALLTGLFWEVVFAKVRHQELHEGF-----FVTALLFTLILPVSIP 169

Query: 86  WWLPVIAASVAIGIGKQAYGGVGRNLFNPAMVGYAFVLLSFPLQMNHWPGQAPGLLDSVQ 145
            WL V+  S  + I K+ +GG+G N  NPA+ G AF+  ++P ++            +V+
Sbjct: 170 LWLVVMGISFGVVIAKELFGGMGYNFLNPALAGLAFIYFAYPSEVT-----------TVK 218

Query: 146 QVFAGGGQIDAWARPTLLDGLRHNRSLTIDELFAS----HPGFGNIGGAGSEWVNLAFLL 201
           Q+ A  G   A A      G            F+     +  FG   GA  E   LA LL
Sbjct: 219 QLVAVDGFSGATALAQAAAGQLQFADYAWYSAFSDPNWWNNFFGFTVGAIGETSTLAVLL 278

Query: 202 GGLFLLQRKVISWHAPAGLLAGLLVFSLLGWNGSGSDSNGSPLL----HLFSGSTMLAAF 257
           GGL LL  ++  W    G++ G++  + L +N  GS +N    +    HL +G   +A  
Sbjct: 279 GGLLLLITRLADWRIVVGVMLGMIATATL-FNLIGSSTNQMMSMPWTWHLVTGGFAIAMM 337

Query: 258 FIATEPVSGPRDDWAKLCFGVGTGVLIYLIRTWG-SYPDGTAFAVLLMNLFAPALERMAV 316
           F+AT+PV+       K  +G   G +  LIR      P+G   A+L  NL+AP  + +  
Sbjct: 338 FMATDPVTTSYTRPGKFVYGALIGFMTVLIRVANPKMPEGVMLAILFANLWAPLFDYLVA 397

Query: 317 Q 317
           +
Sbjct: 398 R 398