Pairwise Alignments

Query, 212 a.a., DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites from Pseudomonas putida KT2440

Subject, 228 a.a., DNA-(apurinic or apyrimidinic site) lyase / endonuclease III from Synechococcus elongatus PCC 7942

 Score =  138 bits (348), Expect = 7e-38
 Identities = 82/210 (39%), Positives = 113/210 (53%), Gaps = 7/210 (3%)

Query: 5   KRLEIFRRLHEDNPDPKTELAYTTPFELLVAVTLSAQSTDVGVNKATARLFPVANTPEAI 64
           + L +   L +  P+    L Y TP +LLVA  LSAQ TD  VN  T  LF       A 
Sbjct: 11  RALAVLAELKQLYPEAPCSLDYETPLQLLVATILSAQCTDARVNLVTPALFARFPDAPAF 70

Query: 65  YALGVEGLSEYIKTIGLYNSKAKNVIEACRLLIERHDSQVPQTREALEALPGVGRKTANV 124
            A  V  + E I++ G Y +KAKN+  A R ++E +  +VPQ+   L  L GV RKTANV
Sbjct: 71  AAADVGEIEELIRSTGFYRNKAKNIHAASRRIVEVYGGEVPQSMPELLTLAGVARKTANV 130

Query: 125 VLNTAFR-QPAMAVDTHIFRVSNRTGIAPGKTVLEVEKKLLKFVPKDYLLDAHHW---LI 180
           VL  AF     + VDTH+ R++NR G       +++E+ L+K +P+    D  +W   L+
Sbjct: 131 VLAHAFGINAGVTVDTHVKRLANRLGFTTHTDPIKIEQDLMKLLPQP---DWENWSIRLV 187

Query: 181 LHGRYVCQARKPRCGSCRIEDLCEYKHKTS 210
            HGR VC ARKP C  C + D C    +T+
Sbjct: 188 YHGRAVCDARKPACDRCSLADHCSTFRRTA 217