Pairwise Alignments

Query, 212 a.a., DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites from Pseudomonas putida KT2440

Subject, 232 a.a., endonuclease III from Methanococcus maripaludis JJ

 Score = 59.3 bits (142), Expect = 6e-14
 Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 14  HEDNPD-PKTELAYTTPFELLVAVTLSAQSTDVGVNKATARLFPVAN-TPEAIYALGVEG 71
           H +N D PKT+      FE+ V   L+  ++   V K+   L  +   TPE I+ L +E 
Sbjct: 44  HPNNYDYPKTK---NQCFEICVGAILTQNTSWPSVEKSLKNLRNLIEITPENIHNLDIEQ 100

Query: 72  LSEYIKTIGLYNSKAKNVIEACRLLIERHDSQVPQTREALEALPGVGRKTANVVLNTAFR 131
           L E IK  G YN K+  +        + ++  VP TRE L  L GVG +TA+ +L  AF+
Sbjct: 101 LKEAIKPSGYYNQKSIRLKSFSEFFTKLNN--VP-TREELLKLNGVGPETADSMLLYAFK 157

Query: 132 QPAMAVDTHIFRVSNRTGIAPGKTVLEVEKKLL-KFVPKDYLL--DAHHWLILHGRYVCQ 188
            P+  VDT+  R+     +  G    +  K L  + +PK+  +  + H  ++ H +   +
Sbjct: 158 VPSFVVDTYTKRILINLNLIEGSEKYDKIKGLFEENIPKNLEIYQEYHALIVEHAKNYYR 217

Query: 189 ARKPRC 194
            ++  C
Sbjct: 218 KKENYC 223