Pairwise Alignments

Query, 223 a.a., glutamate / aspartate ABC transporter - permease subunit from Pseudomonas putida KT2440

Subject, 596 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  118 bits (296), Expect = 2e-31
 Identities = 66/206 (32%), Positives = 112/206 (54%), Gaps = 7/206 (3%)

Query: 18  GMVMTLKLMVMGVIGGIVLGTILALMRLSSSKLLSNLAGAYVNYFRSIPLLLVITWFYLA 77
           G+  +L + V+ +     +G ++ + R S +++       Y+   R  PL++VI W Y  
Sbjct: 389 GLAYSLLMAVIAISVSFFIGLVVGIGRTSDNRICRIPCLLYIELIRGNPLIIVIFWIYFF 448

Query: 78  VPFVLRWITGEDTPVGAFTSCVVAFMMFEAAYFCEIVRAGVQSISKGQMGAAQALGMNYA 137
           +P +       +T    F S  +A  +F  AY  EIVRAG+Q+I  GQ+ AA + G+ + 
Sbjct: 449 IPVLF------NTFFNVFWSATIALTLFTGAYLAEIVRAGIQNIPAGQVEAAYSTGLTFV 502

Query: 138 QTMRLIILPQAFRKMTPLLLQQSIILFQDTSLVYTVGLVDFLNSARS-NGDIIGRSHEFL 196
           QTMR IILPQA ++M P ++ Q I +F+DTSL + +G+++    A+  N  ++    E  
Sbjct: 503 QTMRRIILPQALKQMIPAIVGQFIAIFKDTSLAFVLGVLELTFVAQGINNRLMVYPMEIY 562

Query: 197 IFAGVVYFLISFSASWLVKRLQKRIS 222
                +YF+  +S S    RL++R+S
Sbjct: 563 GTVAFLYFICCWSMSVYAARLERRLS 588



 Score = 99.0 bits (245), Expect = 2e-25
 Identities = 61/200 (30%), Positives = 108/200 (54%), Gaps = 2/200 (1%)

Query: 17  EGMVMTLKLMVMGVIGGIVLGTILALMRLSSSKLLSNLAGAYVNYFRSIPLLLVITWFYL 76
           +G+ +T+++ ++     + LGT+L + RLS    L   A A V +FR+ PLL+ + ++Y 
Sbjct: 59  KGLGVTVRISLISSALALGLGTVLGIARLSLFAPLRLTATAVVEFFRNTPLLVQLFFWYF 118

Query: 77  AVPFVLRWITGEDTPVGAFT--SCVVAFMMFEAAYFCEIVRAGVQSISKGQMGAAQALGM 134
           A P +L     E    G F      +   ++ +A+  E++RAG+QSI KG + AA + G+
Sbjct: 119 AFPAILPENIRELLFTGNFEFWCATIGLSVYTSAFMAEVIRAGLQSIPKGLLEAAYSSGL 178

Query: 135 NYAQTMRLIILPQAFRKMTPLLLQQSIILFQDTSLVYTVGLVDFLNSARSNGDIIGRSHE 194
           NY Q +R IILP AFR + P L  + +   +++SL   VG+ +    ++    +  +  E
Sbjct: 179 NYVQVLRTIILPMAFRAIIPPLGSEFLNNMKNSSLAMVVGVAELTWQSQQVESLTFKGFE 238

Query: 195 FLIFAGVVYFLISFSASWLV 214
               A V+Y  +S   S+++
Sbjct: 239 ATSAATVLYLSLSLLISFIL 258