Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 1427 a.a., Lhr-like helicases from Pseudomonas fluorescens FW300-N2E2

 Score = 2001 bits (5183), Expect = 0.0
 Identities = 1022/1423 (71%), Positives = 1165/1423 (81%), Gaps = 14/1423 (0%)

Query: 14   FHPAVSTWFRRHFATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLREGM 73
            FHPAV  WF + F  VT AQAQAWPLI   +S L+AAPTGSGKTL+AFLAVLD+L+  G+
Sbjct: 4    FHPAVRAWFSQTFPAVTAAQAQAWPLIGQRRSTLVAAPTGSGKTLTAFLAVLDDLVHRGL 63

Query: 74   KHQGELPAQTLVIYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAVRTGDTP 133
            + QG LP QTLV+YVSPLKALSNDI++NLQ PL GI++ +    L    ITTAVRTGDTP
Sbjct: 64   E-QGGLPDQTLVVYVSPLKALSNDIQINLQNPLAGITEQLRRMDLPPLHITTAVRTGDTP 122

Query: 134  QKERAAMRKLAPHILVTTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKRGAHLAL 193
            QKER+AMRK APHILVTTPESLYVL+GS SGR+ LA   TVIVDEIHA+A +KRG+HLAL
Sbjct: 123  QKERSAMRKTAPHILVTTPESLYVLLGSDSGRQMLASTRTVIVDEIHAIAASKRGSHLAL 182

Query: 194  TLERLQALCKKPLRRIGLSATQRPVERVAQFLVGSGRPCAIVDIGHARKRDLAIEVPPVP 253
            +LERLQALC +PL RIGLSATQ+P+E V++FLVG GR C IVDIGHAR RDL IEVPPVP
Sbjct: 183  SLERLQALCAEPLMRIGLSATQKPIEAVSRFLVGEGRSCEIVDIGHARPRDLDIEVPPVP 242

Query: 254  LGAVMAIDVWGLVYDRLATLAREHRTTLVFVNTRRLAERITRHLSDRLGKEAVAAHHGSL 313
            L AVMA DVW LVY+RLA LAREHRTTLVFVNTRRLAER++RHLS+RLGK+AVAAHHGSL
Sbjct: 243  LSAVMANDVWELVYNRLAELAREHRTTLVFVNTRRLAERLSRHLSERLGKDAVAAHHGSL 302

Query: 314  SKALRLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAAFLQRVGRAGHQ 373
            +K  RLDAEQRLK G+L+VL+ATASLELGIDIGD+DLVCQ+ASP SI+AFLQRVGR+GHQ
Sbjct: 303  AKEFRLDAEQRLKRGELKVLIATASLELGIDIGDVDLVCQIASPRSISAFLQRVGRSGHQ 362

Query: 374  VDGVPKGRLFPTSRDDLIECVALLDCVRQGELDALHIPRAPLDVLAQQIVAEASNQAWHE 433
            V G PKGRLF T+RDDLIEC ALLDCVR+GELD LHIP+APLDVLAQQIVAE S Q W E
Sbjct: 363  VGGTPKGRLFATTRDDLIECAALLDCVRRGELDILHIPKAPLDVLAQQIVAEVSCQEWPE 422

Query: 434  QELLDCLRQATPYAELDQHHYQALLRMLAEGYNGRQGVRSAYLHRDAVSGTLRGRRGSQL 493
            Q LL+  R+A+PYAELD+ HYQALL+MLAEG NGRQGVRSAYLHRDAV+ TLRGRRGS+L
Sbjct: 423  QALLETFRRASPYAELDEGHYQALLQMLAEGLNGRQGVRSAYLHRDAVTRTLRGRRGSKL 482

Query: 494  TALTSGGTIPDNADYAVLLEPQALNIGSVNEDFAVESIAGDIFQLGNASYRILRVEPGRV 553
            TA+TSGGTIPDNADY+VLLEPQ LNIGSVNEDFAVESIAGD+FQLGN SYRI+RVE GRV
Sbjct: 483  TAVTSGGTIPDNADYSVLLEPQGLNIGSVNEDFAVESIAGDVFQLGNTSYRIIRVETGRV 542

Query: 554  RVEDAHGLPPTIPFWLGEAPGRSDELSAAVARLQARIDQQLALAGGDTVEVLAWLQATFE 613
            RVEDA G PPTIPFWLGEAPGRS ELS AVARLQA++D  L    G+    L WL  T +
Sbjct: 543  RVEDAQGQPPTIPFWLGEAPGRSAELSLAVARLQAQLDHLLGATPGNLQPALDWLTGTLQ 602

Query: 614  LDEACAGQLLDYLARTREVLGALPSQDTLVMERFFDESGGTQLIIHSPYGSRINRAWGLA 673
            L+ A A QL+DYLA  R   GALPSQDTL+MERFFDESGGTQLIIH+P+GSRINRAWGLA
Sbjct: 603  LNLASAEQLVDYLAPARLAFGALPSQDTLLMERFFDESGGTQLIIHTPFGSRINRAWGLA 662

Query: 674  LRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSRSAEPILIQALLDAPLF 733
            LRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNS SAE IL+QA+LDAPLF
Sbjct: 663  LRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSHSAEQILVQAVLDAPLF 722

Query: 734  GVRWRWNAGVAMALPRFVGGRKVAPQIQRMKSEDLVAAVFPDQIACLENIAGERQIPDHP 793
            GVRWRWNAGVA+ALPR+ GGRKVAPQIQRMKSEDL+A+VFPDQIACLEN+AGER+IPDHP
Sbjct: 723  GVRWRWNAGVALALPRYAGGRKVAPQIQRMKSEDLIASVFPDQIACLENLAGEREIPDHP 782

Query: 794  LVEQTLDDCLHEAMDSEGWLALLRRMESGAVRLLCRDLPAPSPLASAILNARPYAFLDDA 853
            LVEQTLDDCLHEAMDSEGWL LLRRME+G +RL+ RDLPAPSPLA+ IL+ARPY FLDDA
Sbjct: 783  LVEQTLDDCLHEAMDSEGWLTLLRRMEAGQIRLISRDLPAPSPLAAEILSARPYTFLDDA 842

Query: 854  PLEERRTQAVLNRRWNDVHSSDDLGALDADAIAAVAAEAWPQPANPDEMHEALMSLGAIG 913
            PLEERRTQAV+NRRW+D  ++DDLGALDA+AI +V  EAWP P N DEMHEALMSL  I 
Sbjct: 843  PLEERRTQAVINRRWSDPQATDDLGALDAEAIQSVRDEAWPTPTNLDEMHEALMSLACIA 902

Query: 914  QVEVDANPCWDLLLRQLAKAGRALRL---PDDKLWLARERLNLLLALYPTAHREPALERL 970
              E  A+  W   L+ LA+ GRA  +    +  LW+A ERL  L A+YP A  +PAL  L
Sbjct: 903  DSEASAHASWLDWLQTLAEGGRASHVQISAERGLWVALERLTCLQAVYPQAQWQPALTPL 962

Query: 971  AGFDQPIEPDHALSELLRARLSGHGPQTLAQIAAPLGKPVTDIEQALARLEAEGYVLRGH 1030
            AGFD+  + D AL E+LRARLS  GP  L  IA PLG     + QALA+LE +GYVLRG 
Sbjct: 963  AGFDETWDGDEALVEVLRARLSAFGPLPLKAIAYPLGLSTPQVTQALAQLEQQGYVLRGR 1022

Query: 1031 FSPGATDLQWCERHLLARIHRYTVKRLRREIEPVSLQDFMRFLFDWQHLAPDERLRGPQA 1090
            F+PG    +WCERHLLARIHRYTVKRLRREIEPV LQDFMRFLFDWQHL+   + RG   
Sbjct: 1023 FTPGTGQEEWCERHLLARIHRYTVKRLRREIEPVMLQDFMRFLFDWQHLSSSSQGRGNAV 1082

Query: 1091 VAEVLGQLQGFPSAAAAWEAELLPARIKDYSPHWLDEACRSGQFAWSRLAA--TVASSTL 1148
            +  +LGQ +GFP+AA+AW+++LLPARIKDYSP WLDE CRSG++ W+RL+A    ++S L
Sbjct: 1083 LPSILGQFEGFPAAASAWDSDLLPARIKDYSPSWLDELCRSGKWVWTRLSAHQKPSASAL 1142

Query: 1149 TSTPLVLLPRDQLNTWRSLAPAPAVDALGLRAQRVHEALKTQGALFFDELAHEAHLLPSE 1208
             STP+VLLPR Q+  W SLA   A+D L  + Q+VH+AL   GALFFDELAHEAHLL SE
Sbjct: 1143 RSTPVVLLPRSQVALWSSLAGQTALDELSPKTQKVHQALAEHGALFFDELAHEAHLLRSE 1202

Query: 1209 LETALQELVGSGLARADSFTGLRSLITPATKRSSRNSRRGHPPLSSSMAHAGRWALLRRS 1268
            LE ALQELVG+GL  ADSF GLR+LITPA+KR +R+SRRG       M  AGRWALLRRS
Sbjct: 1203 LEIALQELVGAGLVNADSFAGLRALITPASKRQARSSRRGRGAFVGGMDDAGRWALLRRS 1262

Query: 1269 DAPPDHDQR--------LEHIARTLLRRYGVICWRLLARESDVLPPWRELLRCYHRLEAR 1320
               P    R        LEH+A TLLRRYGV+ WRLL RE+D LP WRELLR +HRLEAR
Sbjct: 1263 QPAPVEGNRPAPTPPETLEHVAMTLLRRYGVVFWRLLEREADWLPSWRELLRTFHRLEAR 1322

Query: 1321 GEIRGGRFIAGLAGEQFALPEAVVLLRQVRRREPDGTLQVVSAGDPLNLIGSLLPGAKVP 1380
            GEIRGGRF++GLAGEQFALPEA+ LLR+VRRR  DG+L  V   DPLNL G+LLPGAKVP
Sbjct: 1323 GEIRGGRFVSGLAGEQFALPEAIPLLREVRRRPTDGSLVAVCGVDPLNLAGTLLPGAKVP 1382

Query: 1381 AVIGNRLLYRDGIPVAVRMAGRYAYLVEASAQEQESWRQKLLR 1423
            A+ GNRL+YRDG+PVA ++AG+    +E  AQ     R KL++
Sbjct: 1383 ALAGNRLVYRDGLPVAAQIAGKQHLWMELDAQGMAEIRNKLIQ 1425