Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score = 70.5 bits (171), Expect = 5e-16
 Identities = 83/349 (23%), Positives = 145/349 (41%), Gaps = 39/349 (11%)

Query: 30  TDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLREGM--KHQGELPAQTLVIY 87
           T  Q +A P +  G+ +++AA TG+GKT    L +L+ L   G   K Q   P Q  V+ 
Sbjct: 25  TPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRHGPRQPRVLV 84

Query: 88  VSPLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAVRTGDTPQKERAAMRKLAPHI 147
           ++P + L+  +  + +     +            +  +A   G      +         +
Sbjct: 85  LTPTRELAAQVHESFKVYARDL------------KFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 148 LVTTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKRGAHLALTLERLQALCKKPLR 207
           LV  P  L  L G   G   L+HV  +++DE        R   +    +  + L + P +
Sbjct: 133 LVACPGRLLDLAGQ--GSVDLSHVEILVLDEAD------RMLDMGFVHDVKKVLARLPAK 184

Query: 208 RIGL--SAT-QRPVERVAQFLVGSGRPCAIVDIGHARKR--DLAIEVPPVPLGAVMAIDV 262
           R  L  SAT  + +  +A  L+ +     +       +R       +P     A++A  +
Sbjct: 185 RQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHLI 244

Query: 263 WGLVYDRLATLAREHRTTLVFVNTRRLAERITRHLSDRLGKEAVAAHHGSLSKALRLDAE 322
               ++++          LVF  T+  A R+  +L D+ G  AVA H G+ S+  R  A 
Sbjct: 245 TAGAWEQV----------LVFTRTKHGANRLAEYL-DKHGLPAVAIH-GNKSQNARTKAL 292

Query: 323 QRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAAFLQRVGRAG 371
              K+G++++LVAT     G+DI  +  V     P     ++ R+GR G
Sbjct: 293 ADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTG 341