Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 1438 a.a., DNA repair helicase Lhr (from data) from Pseudomonas fluorescens FW300-N2E3

 Score = 1994 bits (5167), Expect = 0.0
 Identities = 1014/1432 (70%), Positives = 1156/1432 (80%), Gaps = 11/1432 (0%)

Query: 1    MNLPAKHHPVLELFHPAVSTWFRRHFATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSA 60
            MNLP      L  FHPAV  WF   F  VT AQA AWPLI   +S L+AAPTGSGKTL+A
Sbjct: 1    MNLPVSAESALAGFHPAVRAWFNSTFPAVTAAQAGAWPLIRQRRSTLVAAPTGSGKTLTA 60

Query: 61   FLAVLDELLREGMKHQGELPAQTLVIYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNA 120
            FLAV+D+L+ +G+ H GELP +TLV+YVSPLKALSNDI++NLQ PL GI++ + E G   
Sbjct: 61   FLAVIDDLVHQGLAHGGELPDETLVVYVSPLKALSNDIQINLQTPLAGITEQLRELGFPE 120

Query: 121  PRITTAVRTGDTPQKERAAMRKLAPHILVTTPESLYVLMGSASGREGLAHVHTVIVDEIH 180
             +I TAVRTGDTPQK+R+AMRK APHILVTTPESLYVL+GS SGR  LA   TVIVDEIH
Sbjct: 121  LQINTAVRTGDTPQKDRSAMRKSAPHILVTTPESLYVLLGSDSGRRMLASTRTVIVDEIH 180

Query: 181  ALAGNKRGAHLALTLERLQALCKKPLRRIGLSATQRPVERVAQFLVGSGRPCAIVDIGHA 240
            A+AG+KRG+HLAL+LERLQALC +PL RIGLSATQ+P+E V++FLVG+GRPC I+DIGHA
Sbjct: 181  AIAGSKRGSHLALSLERLQALCCEPLMRIGLSATQKPIEAVSRFLVGTGRPCEIIDIGHA 240

Query: 241  RKRDLAIEVPPVPLGAVMAIDVWGLVYDRLATLAREHRTTLVFVNTRRLAERITRHLSDR 300
            R+RDL IEVPPVPL AVMA DVW LVYDR+A LAREHRTTL+FVNTRRLAER++RHLS+R
Sbjct: 241  RRRDLGIEVPPVPLSAVMANDVWELVYDRIAELAREHRTTLIFVNTRRLAERLSRHLSER 300

Query: 301  LGKEAVAAHHGSLSKALRLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSI 360
            LGK+AVAAHHGSL+K  RLDAEQRLK G LQVL+ATASLELGIDIGD+DLVCQ+ASP SI
Sbjct: 301  LGKDAVAAHHGSLAKEFRLDAEQRLKRGDLQVLIATASLELGIDIGDVDLVCQIASPRSI 360

Query: 361  AAFLQRVGRAGHQVDGVPKGRLFPTSRDDLIECVALLDCVRQGELDALHIPRAPLDVLAQ 420
            A FLQRVGR+GHQV G PKGRLF T+RDDLIEC ALLDCVR+GELD L IP APLDVLAQ
Sbjct: 361  AGFLQRVGRSGHQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDTLLIPHAPLDVLAQ 420

Query: 421  QIVAEASNQAWHEQELLDCLRQATPYAELDQHHYQALLRMLAEGYNGRQGVRSAYLHRDA 480
            QIVAE S Q W E+ LL+ +R+A+PY ELD  HYQALL+MLAEGYNGRQG+RSAYLHRDA
Sbjct: 421  QIVAEVSCQEWQERALLEMVRRASPYTELDDTHYQALLQMLAEGYNGRQGIRSAYLHRDA 480

Query: 481  VSGTLRGRRGSQLTALTSGGTIPDNADYAVLLEPQALNIGSVNEDFAVESIAGDIFQLGN 540
            V+ TLRGRRG++LTA+TSGGTIPDNADY+VLLEPQ LNIGSVNEDFAVESIAGD+FQLGN
Sbjct: 481  VTRTLRGRRGAKLTAVTSGGTIPDNADYSVLLEPQGLNIGSVNEDFAVESIAGDVFQLGN 540

Query: 541  ASYRILRVEPGRVRVEDAHGLPPTIPFWLGEAPGRSDELSAAVARLQARIDQQLALAGGD 600
             SYRILRVE G++RVEDA G PPTIPFWLGEAPGRS ELS AVARL A +D+ L    GD
Sbjct: 541  TSYRILRVETGKIRVEDAQGQPPTIPFWLGEAPGRSAELSLAVARLHAHLDELLGATPGD 600

Query: 601  TVEVLAWLQATFELDEACAGQLLDYLARTREVLGALPSQDTLVMERFFDESGGTQLIIHS 660
                + WL  T  L+ A A QL+DYLAR R  LGALPSQ+TL+MERFFDESGGTQLIIHS
Sbjct: 601  VQPSIDWLTETLGLNLASAEQLVDYLARARLTLGALPSQNTLLMERFFDESGGTQLIIHS 660

Query: 661  PYGSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSRSAE 720
             +GSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYL+S +AE
Sbjct: 661  LFGSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLHSNTAE 720

Query: 721  PILIQALLDAPLFGVRWRWNAGVAMALPRFVGGRKVAPQIQRMKSEDLVAAVFPDQIACL 780
             ILIQA+LDAPLFGVRWRWNAGVA+ALPR+ GGRKV PQIQRMKSEDL+A+VFPDQIACL
Sbjct: 721  QILIQAVLDAPLFGVRWRWNAGVALALPRYSGGRKVPPQIQRMKSEDLIASVFPDQIACL 780

Query: 781  ENIAGERQIPDHPLVEQTLDDCLHEAMDSEGWLALLRRMESGAVRLLCRDLPAPSPLASA 840
            EN+ GER+IPDHPLVEQTLDDCLHEAMD EGWLALLRRMESG VRL+ RDLPAPSPLA+ 
Sbjct: 781  ENLVGEREIPDHPLVEQTLDDCLHEAMDCEGWLALLRRMESGEVRLISRDLPAPSPLAAE 840

Query: 841  ILNARPYAFLDDAPLEERRTQAVLNRRWNDVHSSDDLGALDADAIAAVAAEAWPQPANPD 900
            IL+ARPY FLDDAPLEERRTQAVLNRRW+D  S+DDLGALDA+AI +V  EAWPQP + D
Sbjct: 841  ILSARPYTFLDDAPLEERRTQAVLNRRWSDPQSTDDLGALDAEAIQSVRDEAWPQPTSVD 900

Query: 901  EMHEALMSLGAIGQVEVDANPCWDLLLRQLAKAGRALRL---PDDKLWLARERLNLLLAL 957
            EMHEALMSL AI   E  ANP W   L+ LA +GRA RL    +  LWLA ERL  L A+
Sbjct: 901  EMHEALMSLAAISNAEALANPQWSHWLQTLADSGRASRLQINAEHSLWLALERLTCLQAI 960

Query: 958  YPTAHREPALERLAGFDQPIEPDHALSELLRARLSGHGPQTLAQIAAPLGKPVTDIEQAL 1017
            YP A   P L+ L GFD+P + D AL EL+RARLS  GP  +  IA PLG     + QAL
Sbjct: 961  YPHATLLPPLQALPGFDEPWDVDEALVELIRARLSAFGPLPIHAIAQPLGLSTAQVTQAL 1020

Query: 1018 ARLEAEGYVLRGHFSPGATDLQWCERHLLARIHRYTVKRLRREIEPVSLQDFMRFLFDWQ 1077
            A+LE EGYVLRG FSP A   +WCERHLLARIHRYTVKRLRREIEPV+LQDFMRFLFDWQ
Sbjct: 1021 AQLEREGYVLRGRFSPAAPQEEWCERHLLARIHRYTVKRLRREIEPVALQDFMRFLFDWQ 1080

Query: 1078 HLAPDERLRGPQAVAEVLGQLQGFPSAAAAWEAELLPARIKDYSPHWLDEACRSGQFAWS 1137
            HL+P  + +G   +  ++ Q +G+P+AA+AW+++LLPAR+K+YS  WLDE CRSG+  W+
Sbjct: 1081 HLSPATQGQGSAVLPAIVSQFEGYPAAASAWDSDLLPARLKNYSSTWLDELCRSGKLVWT 1140

Query: 1138 RLAA--TVASSTLTSTPLVLLPRDQLNTWRSLAPAPAVDALGLRAQRVHEALKTQGALFF 1195
            RL       S+ L STP+VLLPR Q+  W SL   P V  L  + Q+VH+AL   GALFF
Sbjct: 1141 RLTVRNKATSAALRSTPIVLLPRAQVPLWSSLTEPPEVSELSPKTQKVHQALSQHGALFF 1200

Query: 1196 DELAHEAHLLPSELETALQELVGSGLARADSFTGLRSLITPATKRSSRNSRRGHPPLSSS 1255
            DEL HEAHLL SELE ALQELVG+GL  ADSF GLR+LITPA+KR +R+SRRG       
Sbjct: 1201 DELLHEAHLLRSELEIALQELVGAGLVNADSFAGLRALITPASKRQARSSRRGRGAFVGG 1260

Query: 1256 MAHAGRWALLRRSDAPPDHDQR------LEHIARTLLRRYGVICWRLLARESDVLPPWRE 1309
            M  AGRWALLRR   PP  D R      LEHIA TLLRRYGV+ WRLL RE++ LP WRE
Sbjct: 1261 MDDAGRWALLRRQSTPPVVDNRGTPSETLEHIALTLLRRYGVVFWRLLEREAEWLPSWRE 1320

Query: 1310 LLRCYHRLEARGEIRGGRFIAGLAGEQFALPEAVVLLRQVRRREPDGTLQVVSAGDPLNL 1369
            LLR +HRLEARGEIRGGRF++GLAGEQFALPEA+ LLR+VRRR+ DG+L  V   DPLNL
Sbjct: 1321 LLRTFHRLEARGEIRGGRFVSGLAGEQFALPEAIPLLREVRRRQHDGSLISVCGVDPLNL 1380

Query: 1370 IGSLLPGAKVPAVIGNRLLYRDGIPVAVRMAGRYAYLVEASAQEQESWRQKL 1421
             G+LLPG KVPA+  NRL+YRDG+P A  +AG   Y +E          +KL
Sbjct: 1381 AGTLLPGHKVPALASNRLVYRDGLPAAAEIAGTQHYWLELDQPNTAELHKKL 1432