Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 830 a.a., FIG003033: Helicase domain protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  216 bits (551), Expect = 6e-60
 Identities = 212/695 (30%), Positives = 301/695 (43%), Gaps = 59/695 (8%)

Query: 21  WFRRHFATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLREGMKHQGELP 80
           WF +        Q   W     G+S LL  PTGSGKTL+AF   L E L      +G  P
Sbjct: 18  WFAQRGWAPLPFQRDVWKRYLDGESGLLHTPTGSGKTLAAFGGPLLEALAA----RGRTP 73

Query: 81  AQTLV-------------IYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAV 127
             T V             ++++PL+AL+ D    L+ P+E +       GL+       +
Sbjct: 74  PATAVARGRRQPQRSLQVLWITPLRALAADTARALREPVEAL-------GLDWQ---VGL 123

Query: 128 RTGDTPQKERAAMRKLAPHILVTTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKR 187
           RTGD   +++   R     +LVTTPESL +L+        LA +  VIVDE H L GNKR
Sbjct: 124 RTGDASARDKRLARSGKLDVLVTTPESLALLLSYPDTAPQLAALRCVIVDEWHELLGNKR 183

Query: 188 GAHLALTLERLQALCKKPLRRIGLSATQRPVERVAQFLVGSGRPCAIVDIGHARKRDLAI 247
           G  L L L RL++     LR  GLSAT   + +    L+      A+V     R   L  
Sbjct: 184 GVLLQLCLARLRSW-SPALRIWGLSATLGNLAQARDVLLPHQPDAALVSGVKPRAMTLET 242

Query: 248 EVPPVPLGAVMAIDVWGLVYDRLATLAREHRTTLVFVNTRRLAERITRHLSDRLGKEA-- 305
            +P        A  +      R+     E RT+LVF NTR  AE   + LS    ++A  
Sbjct: 243 LLPETGERFPWAGHLGLAQLARVLHKLMEQRTSLVFTNTRAQAELWHQALSAVWPEDAAT 302

Query: 306 VAAHHGSLSKALRLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAAFLQ 365
           +A HHGSL  ALR  AE  L+ G L+ +VAT+SL+LG+D   +D V QV SP  IA  LQ
Sbjct: 303 LALHHGSLDPALRTAAEHGLRDGSLRCVVATSSLDLGVDFPAVDQVLQVGSPKGIARLLQ 362

Query: 366 RVGRAGHQVDGVPKGRLFPTSRDDLIECVALLDCVRQGELDALHIPRAPLDVLAQQIVAE 425
           R GRA H+          P+   +L+E  A    + QG+++    PR  LDVLAQ  V  
Sbjct: 363 RAGRARHRPGESGHVVCVPSHALELLEYAAARRAIAQGQIETRPPPRLSLDVLAQHCVTL 422

Query: 426 ASNQAWHEQELLDCLRQATPYAELDQHHYQALLRMLAEGYNGRQGVRSAY--LHRDAVSG 483
           A    +    LL  +R    +A LD+  +QA+L  + +G +        +  +  DA   
Sbjct: 423 ALGGGFQADALLREVRGTDAFATLDEATWQAVLDFIVQGGSALAHYPDFHKVVRDDAGIY 482

Query: 484 TLRGRRGSQLTALTSGGTIPDNADYAVLLEPQALNIGSVNEDFAVESIAGDIFQLGNASY 543
            +  RR +    L+ G    D +     L  +   +G+V E F      GD FQ      
Sbjct: 483 RVTDRRVALRHRLSIGTITSDGSVRVQFL--RGGRLGAVEEQFVGRLKRGDRFQFAGRLL 540

Query: 544 RILRVEPGRVRVEDAHGLPPTIPFWLGEAPGRSDELSAAVARLQARIDQQLALAGGDTVE 603
            ++R+E     V  A G    +P W+G   GR    SA    ++A     +    GD  E
Sbjct: 541 ELVRLEDMTAYVRIAKGGSGVVPKWMG---GRMPLSSALGREVEA-----VFADPGDAPE 592

Query: 604 VLAWLQATFELDEACAGQLLDYLARTREVLGALPSQDTLVMERFFDESGGTQLIIHSPYG 663
           +                  L  L + +  L ALP    L++E       G  L ++   G
Sbjct: 593 M----------------HTLAPLLQLQSSLSALPGPGHLLVET-IKARDGRHLFVYPFAG 635

Query: 664 SRINRAWGLALRKRFCRTFNFELQAAASEDAIVLS 698
            ++N      L  R+ R        AA++   VLS
Sbjct: 636 RQVNEGLAALLAARWGRRQRNTFSFAANDYGFVLS 670